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Items: 1 to 20 of 22

1.

Acute Retinal Necrosis Caused by the Zoster Vaccine Virus.

Heath G, Depledge DP, Brown JR, Hale AD, Tutil H, Williams R, Breuer J.

Clin Infect Dis. 2017 Nov 29;65(12):2122-2125. doi: 10.1093/cid/cix683.

PMID:
29020238
2.

Detection of Low Frequency Multi-Drug Resistance and Novel Putative Maribavir Resistance in Immunocompromised Pediatric Patients with Cytomegalovirus.

Houldcroft CJ, Bryant JM, Depledge DP, Margetts BK, Simmonds J, Nicolaou S, Tutill HJ, Williams R, Worth AJ, Marks SD, Veys P, Whittaker E, Breuer J.

Front Microbiol. 2016 Sep 9;7:1317. doi: 10.3389/fmicb.2016.01317. eCollection 2016.

3.

Viral Genome Sequencing Proves Nosocomial Transmission of Fatal Varicella.

Depledge DP, Brown J, Macanovic J, Underhill G, Breuer J.

J Infect Dis. 2016 Nov 1;214(9):1399-1402. Epub 2016 Aug 28.

4.

Deep Sequencing of Distinct Preparations of the Live Attenuated Varicella-Zoster Virus Vaccine Reveals a Conserved Core of Attenuating Single-Nucleotide Polymorphisms.

Depledge DP, Yamanishi K, Gomi Y, Gershon AA, Breuer J.

J Virol. 2016 Sep 12;90(19):8698-704. doi: 10.1128/JVI.00998-16. Print 2016 Oct 1.

5.

In vitro system using human neurons demonstrates that varicella-zoster vaccine virus is impaired for reactivation, but not latency.

Sadaoka T, Depledge DP, Rajbhandari L, Venkatesan A, Breuer J, Cohen JI.

Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):E2403-12. doi: 10.1073/pnas.1522575113. Epub 2016 Apr 12.

6.

Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples.

Brown AC, Bryant JM, Einer-Jensen K, Holdstock J, Houniet DT, Chan JZ, Depledge DP, Nikolayevskyy V, Broda A, Stone MJ, Christiansen MT, Williams R, McAndrew MB, Tutill H, Brown J, Melzer M, Rosmarin C, McHugh TD, Shorten RJ, Drobniewski F, Speight G, Breuer J.

J Clin Microbiol. 2015 Jul;53(7):2230-7. doi: 10.1128/JCM.00486-15. Epub 2015 May 13.

7.

Recombination of Globally Circulating Varicella-Zoster Virus.

Norberg P, Depledge DP, Kundu S, Atkinson C, Brown J, Haque T, Hussaini Y, MacMahon E, Molyneaux P, Papaevangelou V, Sengupta N, Koay ES, Tang JW, Underhill GS, Grahn A, Studahl M, Breuer J, Bergström T.

J Virol. 2015 Jul;89(14):7133-46.

8.

Rates of vaccine evolution show strong effects of latency: implications for varicella zoster virus epidemiology.

Weinert LA, Depledge DP, Kundu S, Gershon AA, Nichols RA, Balloux F, Welch JJ, Breuer J.

Mol Biol Evol. 2015 Apr;32(4):1020-8. doi: 10.1093/molbev/msu406. Epub 2015 Jan 6.

9.

Whole-genome enrichment and sequencing of Chlamydia trachomatis directly from clinical samples.

Christiansen MT, Brown AC, Kundu S, Tutill HJ, Williams R, Brown JR, Holdstock J, Holland MJ, Stevenson S, Dave J, Tong CY, Einer-Jensen K, Depledge DP, Breuer J.

BMC Infect Dis. 2014 Nov 12;14:591. doi: 10.1186/s12879-014-0591-3.

10.

Evolution of cocirculating varicella-zoster virus genotypes during a chickenpox outbreak in Guinea-Bissau.

Depledge DP, Gray ER, Kundu S, Cooray S, Poulsen A, Aaby P, Breuer J.

J Virol. 2014 Dec;88(24):13936-46. doi: 10.1128/JVI.02337-14. Epub 2014 Oct 1.

11.

Deep sequencing of viral genomes provides insight into the evolution and pathogenesis of varicella zoster virus and its vaccine in humans.

Depledge DP, Kundu S, Jensen NJ, Gray ER, Jones M, Steinberg S, Gershon A, Kinchington PR, Schmid DS, Balloux F, Nichols RA, Breuer J.

Mol Biol Evol. 2014 Feb;31(2):397-409. doi: 10.1093/molbev/mst210. Epub 2013 Oct 25.

12.

Mode of virus rescue determines the acquisition of VHS mutations in VP22-negative herpes simplex virus 1.

Ebert K, Depledge DP, Breuer J, Harman L, Elliott G.

J Virol. 2013 Sep;87(18):10389-93. doi: 10.1128/JVI.01654-13. Epub 2013 Jul 17.

13.

Next-generation whole genome sequencing identifies the direction of norovirus transmission in linked patients.

Kundu S, Lockwood J, Depledge DP, Chaudhry Y, Aston A, Rao K, Hartley JC, Goodfellow I, Breuer J.

Clin Infect Dis. 2013 Aug;57(3):407-14. doi: 10.1093/cid/cit287. Epub 2013 May 3.

14.

Viral population analysis and minority-variant detection using short read next-generation sequencing.

Watson SJ, Welkers MR, Depledge DP, Coulter E, Breuer JM, de Jong MD, Kellam P.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120205. doi: 10.1098/rstb.2012.0205. Print 2013 Mar 19.

15.

Specific capture and whole-genome sequencing of viruses from clinical samples.

Depledge DP, Palser AL, Watson SJ, Lai IY, Gray ER, Grant P, Kanda RK, Leproust E, Kellam P, Breuer J.

PLoS One. 2011;6(11):e27805. doi: 10.1371/journal.pone.0027805. Epub 2011 Nov 18. Erratum in: PLoS One. 2012;7(1). doi:10.1371/annotation/3f1444bc-ab9d-4112-958a-2e068792f26f.

16.

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania.

Rogers MB, Hilley JD, Dickens NJ, Wilkes J, Bates PA, Depledge DP, Harris D, Her Y, Herzyk P, Imamura H, Otto TD, Sanders M, Seeger K, Dujardin JC, Berriman M, Smith DF, Hertz-Fowler C, Mottram JC.

Genome Res. 2011 Dec;21(12):2129-42. doi: 10.1101/gr.122945.111. Epub 2011 Oct 28.

17.

Leishmania-specific surface antigens show sub-genus sequence variation and immune recognition.

Depledge DP, MacLean LM, Hodgkinson MR, Smith BA, Jackson AP, Ma S, Uliana SR, Smith DF.

PLoS Negl Trop Dis. 2010 Sep 28;4(9):e829. doi: 10.1371/journal.pntd.0000829.

18.

TriTrypDB: a functional genomic resource for the Trypanosomatidae.

Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ Jr, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62. doi: 10.1093/nar/gkp851. Epub 2009 Oct 20.

19.

Comparative expression profiling of Leishmania: modulation in gene expression between species and in different host genetic backgrounds.

Depledge DP, Evans KJ, Ivens AC, Aziz N, Maroof A, Kaye PM, Smith DF.

PLoS Negl Trop Dis. 2009 Jul 7;3(7):e476. doi: 10.1371/journal.pntd.0000476.

20.

Comparative genomic analysis of three Leishmania species that cause diverse human disease.

Peacock CS, Seeger K, Harris D, Murphy L, Ruiz JC, Quail MA, Peters N, Adlem E, Tivey A, Aslett M, Kerhornou A, Ivens A, Fraser A, Rajandream MA, Carver T, Norbertczak H, Chillingworth T, Hance Z, Jagels K, Moule S, Ormond D, Rutter S, Squares R, Whitehead S, Rabbinowitsch E, Arrowsmith C, White B, Thurston S, Bringaud F, Baldauf SL, Faulconbridge A, Jeffares D, Depledge DP, Oyola SO, Hilley JD, Brito LO, Tosi LR, Barrell B, Cruz AK, Mottram JC, Smith DF, Berriman M.

Nat Genet. 2007 Jul;39(7):839-47. Epub 2007 Jun 17.

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