Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 76

1.

Profiling of Single-Cell Transcriptomes.

Chen W, Gardeux V, Meireles-Filho A, Deplancke B.

Curr Protoc Mouse Biol. 2017 Sep 8;7(3):145-175. doi: 10.1002/cpmo.30.

PMID:
28884792
2.

Bayesian association scan reveals loci associated with human lifespan and linked biomarkers.

McDaid AF, Joshi PK, Porcu E, Komljenovic A, Li H, Sorrentino V, Litovchenko M, Bevers RPJ, Rüeger S, Reymond A, Bochud M, Deplancke B, Williams RW, Robinson-Rechavi M, Paccaud F, Rousson V, Auwerx J, Wilson JF, Kutalik Z.

Nat Commun. 2017 Jul 27;8:15842. doi: 10.1038/ncomms15842.

3.

ASAP: a Web-based platform for the analysis and interactive visualization of single-cell RNA-seq data.

Gardeux V, David FPA, Shajkofci A, Schwalie PC, Deplancke B.

Bioinformatics. 2017 May 24. doi: 10.1093/bioinformatics/btx337. [Epub ahead of print]

PMID:
28541377
4.

Editorial overview: Genome architecture and expression.

Deplancke B, Sagerström C.

Curr Opin Genet Dev. 2017 Apr;43:iv-v. doi: 10.1016/j.gde.2017.04.002. Epub 2017 May 1. No abstract available.

PMID:
28473185
5.

Transcriptional regulatory logic of the diurnal cycle in the mouse liver.

Sobel JA, Krier I, Andersin T, Raghav S, Canella D, Gilardi F, Kalantzi AS, Rey G, Weger B, Gachon F, Dal Peraro M, Hernandez N, Schibler U, Deplancke B, Naef F; CycliX consortium.

PLoS Biol. 2017 Apr 17;15(4):e2001069. doi: 10.1371/journal.pbio.2001069. eCollection 2017 Apr.

6.

Tissue-specific enhancer repression through molecular integration of cell signaling inputs.

Mojica-Vázquez LH, Benetah MH, Baanannou A, Bernat-Fabre S, Deplancke B, Cribbs DL, Bourbon HM, Boube M.

PLoS Genet. 2017 Apr 10;13(4):e1006718. doi: 10.1371/journal.pgen.1006718. eCollection 2017 Apr.

7.

The Zic family homologue Odd-paired regulates Alk expression in Drosophila.

Mendoza-García P, Hugosson F, Fallah M, Higgins ML, Iwasaki Y, Pfeifer K, Wolfstetter G, Varshney G, Popichenko D, Gergen JP, Hens K, Deplancke B, Palmer RH.

PLoS Genet. 2017 Apr 3;13(4):e1006617. doi: 10.1371/journal.pgen.1006617. eCollection 2017 Apr.

8.

Dissecting the brown adipogenic regulatory network using integrative genomics.

Pradhan RN, Bues JJ, Gardeux V, Schwalie PC, Alpern D, Chen W, Russeil J, Raghav SK, Deplancke B.

Sci Rep. 2017 Feb 9;7:42130. doi: 10.1038/srep42130.

9.

A systems perspective on brown adipogenesis and metabolic activation.

Pradhan RN, Zachara M, Deplancke B.

Obes Rev. 2017 Feb;18 Suppl 1:65-81. doi: 10.1111/obr.12512. Review.

PMID:
28164456
10.

Systematic dissection of genomic features determining transcription factor binding and enhancer function.

Grossman SR, Zhang X, Wang L, Engreitz J, Melnikov A, Rogov P, Tewhey R, Isakova A, Deplancke B, Bernstein BE, Mikkelsen TS, Lander ES.

Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):E1291-E1300. doi: 10.1073/pnas.1621150114. Epub 2017 Jan 30.

11.

SMiLE-seq identifies binding motifs of single and dimeric transcription factors.

Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B.

Nat Methods. 2017 Mar;14(3):316-322. doi: 10.1038/nmeth.4143. Epub 2017 Jan 16.

PMID:
28092692
12.

GETPrime 2.0: gene- and transcript-specific qPCR primers for 13 species including polymorphisms.

David FP, Rougemont J, Deplancke B.

Nucleic Acids Res. 2017 Jan 4;45(D1):D56-D60. doi: 10.1093/nar/gkw913. Epub 2016 Oct 7.

13.

Gene regulatory mechanisms underlying the intestinal innate immune response.

Meireles-Filho AC, Deplancke B.

Curr Opin Genet Dev. 2017 Apr;43:46-52. doi: 10.1016/j.gde.2016.11.004. Epub 2016 Dec 20. Review.

PMID:
28011293
14.

Transcription factor proteomics-Tools, applications, and challenges.

Simicevic J, Deplancke B.

Proteomics. 2017 Feb;17(3-4). doi: 10.1002/pmic.201600317. Epub 2017 Jan 24. Review.

PMID:
27860250
15.

PDF Signaling Is an Integral Part of the Drosophila Circadian Molecular Oscillator.

Mezan S, Feuz JD, Deplancke B, Kadener S.

Cell Rep. 2016 Oct 11;17(3):708-719. doi: 10.1016/j.celrep.2016.09.048.

16.

The Movement Tracker: A Flexible System for Automated Movement Analysis in Invertebrate Model Organisms.

Mouchiroud L, Sorrentino V, Williams EG, Cornaglia M, Frochaux MV, Lin T, Nicolet-Dit-Félix AA, Krishnamani G, Ouhmad T, Gijs MA, Deplancke B, Auwerx J.

Curr Protoc Neurosci. 2016 Oct 3;77:8.37.1-8.37.21. doi: 10.1002/cpns.17.

PMID:
27696358
17.

Potential Direct Regulators of the Drosophila yellow Gene Identified by Yeast One-Hybrid and RNAi Screens.

Kalay G, Lusk R, Dome M, Hens K, Deplancke B, Wittkopp PJ.

G3 (Bethesda). 2016 Oct 13;6(10):3419-3430. doi: 10.1534/g3.116.032607.

18.

The Genetics of Transcription Factor DNA Binding Variation.

Deplancke B, Alpern D, Gardeux V.

Cell. 2016 Jul 28;166(3):538-554. doi: 10.1016/j.cell.2016.07.012. Review.

19.

Chromosomal contacts connect loci associated with autism, BMI and head circumference phenotypes.

Loviglio MN, Leleu M, Männik K, Passeggeri M, Giannuzzi G, van der Werf I, Waszak SM, Zazhytska M, Roberts-Caldeira I, Gheldof N, Migliavacca E, Alfaiz AA, Hippolyte L, Maillard AM; 2p15 Consortium; 16p11.2 Consortium, Van Dijck A, Kooy RF, Sanlaville D, Rosenfeld JA, Shaffer LG, Andrieux J, Marshall C, Scherer SW, Shen Y, Gusella JF, Thorsteinsdottir U, Thorleifsson G, Dermitzakis ET, Deplancke B, Beckmann JS, Rougemont J, Jacquemont S, Reymond A.

Mol Psychiatry. 2017 Jun;22(6):836-849. doi: 10.1038/mp.2016.84. Epub 2016 May 31.

20.

Quantification of Cooperativity in Heterodimer-DNA Binding Improves the Accuracy of Binding Specificity Models.

Isakova A, Berset Y, Hatzimanikatis V, Deplancke B.

J Biol Chem. 2016 May 6;291(19):10293-306. doi: 10.1074/jbc.M115.691154. Epub 2016 Feb 24.

Supplemental Content

Loading ...
Support Center