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Transcriptome Profiling of the Green Alga Spirogyra pratensis (Charophyta) Suggests an Ancestral Role for Ethylene in Cell Wall Metabolism, Photosynthesis, and Abiotic Stress Responses.

Van de Poel B, Cooper ED, Van Der Straeten D, Chang C, Delwiche CF.

Plant Physiol. 2016 Sep;172(1):533-45. doi: 10.1104/pp.16.00299. Epub 2016 Aug 3.


The Evolutionary Origin of a Terrestrial Flora.

Delwiche CF, Cooper ED.

Curr Biol. 2015 Oct 5;25(19):R899-910. doi: 10.1016/j.cub.2015.08.029. Review.


Erratum to: Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.

Gibbons TR, Mount SM, Cooper ED, Delwiche CF.

BMC Bioinformatics. 2015 Aug 28;16:274. doi: 10.1186/s12859-015-0690-1. No abstract available.


Complex Ancestries of Isoprenoid Synthesis in Dinoflagellates.

Bentlage B, Rogers TS, Bachvaroff TR, Delwiche CF.

J Eukaryot Microbiol. 2016 Jan-Feb;63(1):123-37. doi: 10.1111/jeu.12261. Epub 2015 Sep 12.


Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.

Gibbons TR, Mount SM, Cooper ED, Delwiche CF.

BMC Bioinformatics. 2015 Jul 10;16:218. doi: 10.1186/s12859-015-0625-x. Erratum in: BMC Bioinformatics. 2015;16:274.


Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array.

Mendez GS, Delwiche CF, Apt KE, Lippmeier JC.

J Eukaryot Microbiol. 2015 Sep-Oct;62(5):679-87. doi: 10.1111/jeu.12230.


Phylogenomic analysis of Emiliania huxleyi provides evidence for haptophyte-stramenopile association and a chimeric haptophyte nuclear genome.

Miller JJ, Delwiche CF.

Mar Genomics. 2015 Jun;21:31-42. doi: 10.1016/j.margen.2015.02.008. Epub 2015 Mar 5.


Conservation of ethylene as a plant hormone over 450 million years of evolution.

Ju C, Van de Poel B, Cooper ED, Thierer JH, Gibbons TR, Delwiche CF, Chang C.

Nat Plants. 2015 Jan 8;1:14004. doi: 10.1038/nplants.2014.4.


Metatranscriptome profiling of a harmful algal bloom.

Cooper ED, Bentlage B, Gibbons TR, Bachvaroff TR, Delwiche CF.

Harmful Algae. 2014 Jul;37:75-83.


Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae.

Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, Pankey MS, Oakley TH.

Proc Biol Sci. 2015 Jan 22;282(1799):20141745. doi: 10.1098/rspb.2014.1745.


Directional auxin transport mechanisms in early diverging land plants.

Viaene T, Landberg K, Thelander M, Medvecka E, Pederson E, Feraru E, Cooper ED, Karimi M, Delwiche CF, Ljung K, Geisler M, Sundberg E, Friml J.

Curr Biol. 2014 Dec 1;24(23):2786-91. doi: 10.1016/j.cub.2014.09.056. Epub 2014 Nov 13.


Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens.

Demko V, Perroud PF, Johansen W, Delwiche CF, Cooper ED, Remme P, Ako AE, Kugler KG, Mayer KF, Quatrano R, Olsen OA.

Plant Physiol. 2014 Oct;166(2):903-19. doi: 10.1104/pp.114.243758. Epub 2014 Sep 2.


Dinoflagellate phylogeny revisited: using ribosomal proteins to resolve deep branching dinoflagellate clades.

Bachvaroff TR, Gornik SG, Concepcion GT, Waller RF, Mendez GS, Lippmeier JC, Delwiche CF.

Mol Phylogenet Evol. 2014 Jan;70:314-22. doi: 10.1016/j.ympev.2013.10.007. Epub 2013 Oct 14.


Pan genome of the phytoplankton Emiliania underpins its global distribution.

Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV.

Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221. Epub 2013 Jun 12.


Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

Finet C, Timme RE, Delwiche CF, Marletaz F.

Curr Biol. 2012 Aug 7;22(15):1456-7. No abstract available.


Origin and evolution of PIN auxin transporters in the green lineage.

Viaene T, Delwiche CF, Rensing SA, Friml J.

Trends Plant Sci. 2013 Jan;18(1):5-10. doi: 10.1016/j.tplants.2012.08.009. Epub 2012 Sep 14.


Origin of strigolactones in the green lineage.

Delaux PM, Xie X, Timme RE, Puech-Pages V, Dunand C, Lecompte E, Delwiche CF, Yoneyama K, Bécard G, Séjalon-Delmas N.

New Phytol. 2012 Sep;195(4):857-71. doi: 10.1111/j.1469-8137.2012.04209.x. Epub 2012 Jun 27.


Conserved and diversified gene families of monovalent cation/h(+) antiporters from algae to flowering plants.

Chanroj S, Wang G, Venema K, Zhang MW, Delwiche CF, Sze H.

Front Plant Sci. 2012 Feb 14;3:25. doi: 10.3389/fpls.2012.00025. eCollection 2012.


Broad phylogenomic sampling and the sister lineage of land plants.

Timme RE, Bachvaroff TR, Delwiche CF.

PLoS One. 2012;7(1):e29696. doi: 10.1371/journal.pone.0029696. Epub 2012 Jan 13.

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