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Items: 1 to 20 of 121

1.

Lmo2 expression defines tumor cell identity during T-cell leukemogenesis.

García-Ramírez I, Bhatia S, Rodríguez-Hernández G, González-Herrero I, Walter C, González de Tena-Dávila S, Parvin S, Haas O, Woessmann W, Stanulla M, Schrappe M, Dugas M, Natkunam Y, Orfao A, Domínguez V, Pintado B, Blanco O, Alonso-López D, De Las Rivas J, Martín-Lorenzo A, Jiménez R, García Criado FJ, García Cenador MB, Lossos IS, Vicente-Dueñas C, Borkhardt A, Hauer J, Sánchez-García I.

EMBO J. 2018 Jul 13;37(14). pii: e98783. doi: 10.15252/embj.201798783. Epub 2018 Jun 7.

2.

JAMI: a Java library for molecular interactions and data interoperability.

Sivade Dumousseau M, Koch M, Shrivastava A, Alonso-López D, De Las Rivas J, Del-Toro N, Combe CW, Meldal BHM, Heimbach J, Rappsilber J, Sullivan J, Yehudi Y, Orchard S.

BMC Bioinformatics. 2018 Apr 11;19(1):133. doi: 10.1186/s12859-018-2119-0.

3.

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, Ceol A, Cesareni G, Combe C, De Las Rivas J, Del-Toro N, Heimbach J, Hermjakob H, Jurisica I, Koch M, Licata L, Lovering RC, Lynn DJ, Meldal BHM, Micklem G, Panni S, Porras P, Ricard-Blum S, Roechert B, Salwinski L, Shrivastava A, Sullivan J, Thierry-Mieg N, Yehudi Y, Van Roey K, Orchard S.

BMC Bioinformatics. 2018 Apr 11;19(1):134. doi: 10.1186/s12859-018-2118-1.

4.

Human Interactomics: Comparative Analysis of Different Protein Interaction Resources and Construction of a Cancer Protein-Drug Bipartite Network.

De Las Rivas J, Alonso-López D, Arroyo MM.

Adv Protein Chem Struct Biol. 2018;111:263-282. doi: 10.1016/bs.apcsb.2017.09.002. Epub 2017 Nov 6.

PMID:
29459035
5.

Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures.

De Las Rivas J, Bonavides-Martínez C, Campos-Laborie FJ.

Brief Bioinform. 2017 Jun 28. doi: 10.1093/bib/bbx064. [Epub ahead of print] Erratum in: Brief Bioinform. 2017 Nov 1;18(6):1091.

PMID:
28981567
6.

Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures.

De Las Rivas J, Bonavides-Martínez C, Campos-Laborie FJ.

Brief Bioinform. 2017 Nov 1;18(6):1091. doi: 10.1093/bib/bbx114. No abstract available.

7.

Mesenchymal stromal cells (MSC) from JAK2+ myeloproliferative neoplasms differ from normal MSC and contribute to the maintenance of neoplastic hematopoiesis.

Ramos TL, Sánchez-Abarca LI, Rosón-Burgo B, Redondo A, Rico A, Preciado S, Ortega R, Rodríguez C, Muntión S, Hernández-Hernández Á, De Las Rivas J, González M, González Porras JR, Del Cañizo C, Sánchez-Guijo F.

PLoS One. 2017 Aug 10;12(8):e0182470. doi: 10.1371/journal.pone.0182470. eCollection 2017.

8.

Infection Exposure Promotes ETV6-RUNX1 Precursor B-cell Leukemia via Impaired H3K4 Demethylases.

Rodríguez-Hernández G, Hauer J, Martín-Lorenzo A, Schäfer D, Bartenhagen C, García-Ramírez I, Auer F, González-Herrero I, Ruiz-Roca L, Gombert M, Okpanyi V, Fischer U, Chen C, Dugas M, Bhatia S, Linka RM, Garcia-Suquia M, Rascón-Trincado MV, Garcia-Sanchez A, Blanco O, García-Cenador MB, García-Criado FJ, Cobaleda C, Alonso-López D, De Las Rivas J, Müschen M, Vicente-Dueñas C, Sánchez-García I, Borkhardt A.

Cancer Res. 2017 Aug 15;77(16):4365-4377. doi: 10.1158/0008-5472.CAN-17-0701. Epub 2017 Jun 19.

PMID:
28630052
9.

Screening and Validation of Novel Biomarkers in Osteoarticular Pathologies by Comprehensive Combination of Protein Array Technologies.

Sierra-Sánchez Á, Garrido-Martín D, Lourido L, González-González M, Díez P, Ruiz-Romero C, Sjöber R, Droste C, De Las Rivas J, Nilsson P, Blanco F, Fuentes M.

J Proteome Res. 2017 May 5;16(5):1890-1899. doi: 10.1021/acs.jproteome.6b00980. Epub 2017 Apr 17.

PMID:
28379711
10.

Ten simple rules for forming a scientific professional society.

Gaëta BA, De Las Rivas J, Horton P, Meysman P, Mulder N, Romano P, Welch L.

PLoS Comput Biol. 2017 Mar 23;13(3):e1005226. doi: 10.1371/journal.pcbi.1005226. eCollection 2017 Mar. No abstract available.

11.

Crebbp loss cooperates with Bcl2 overexpression to promote lymphoma in mice.

García-Ramírez I, Tadros S, González-Herrero I, Martín-Lorenzo A, Rodríguez-Hernández G, Moore D, Ruiz-Roca L, Blanco O, Alonso-López D, Rivas JL, Hartert K, Duval R, Klinkebiel D, Bast M, Vose J, Lunning M, Fu K, Greiner T, Rodrigues-Lima F, Jiménez R, Criado FJG, Cenador MBG, Brindle P, Vicente-Dueñas C, Alizadeh A, Sánchez-García I, Green MR.

Blood. 2017 May 11;129(19):2645-2656. doi: 10.1182/blood-2016-08-733469. Epub 2017 Mar 13.

12.

Epidermal Growth Factor Signaling towards Proliferation: Modeling and Logic Inference Using Forward and Backward Search.

Riesco A, Santos-Buitrago B, De Las Rivas J, Knapp M, Santos-García G, Talcott C.

Biomed Res Int. 2017;2017:1809513. doi: 10.1155/2017/1809513. Epub 2017 Jan 16.

13.

Identification of expression patterns in the progression of disease stages by integration of transcriptomic data.

Aibar S, Abaigar M, Campos-Laborie FJ, Sánchez-Santos JM, Hernandez-Rivas JM, De Las Rivas J.

BMC Bioinformatics. 2016 Nov 22;17(Suppl 15):432. doi: 10.1186/s12859-016-1290-4.

14.

Linking amyotrophic lateral sclerosis and spinal muscular atrophy through RNA-transcriptome homeostasis: a genomics perspective.

Gama-Carvalho M, L Garcia-Vaquero M, R Pinto F, Besse F, Weis J, Voigt A, Schulz JB, De Las Rivas J.

J Neurochem. 2017 Apr;141(1):12-30. doi: 10.1111/jnc.13945. Epub 2017 Feb 28. Review.

15.

MicroRNA (miR)-203 and miR-205 expression patterns identify subgroups of prognosis in cutaneous squamous cell carcinoma.

Cañueto J, Cardeñoso-Álvarez E, García-Hernández JL, Galindo-Villardón P, Vicente-Galindo P, Vicente-Villardón JL, Alonso-López D, De Las Rivas J, Valero J, Moyano-Sanz E, Fernández-López E, Mao JH, Castellanos-Martín A, Román-Curto C, Pérez-Losada J.

Br J Dermatol. 2017 Jul;177(1):168-178. doi: 10.1111/bjd.15236. Epub 2017 May 8.

16.

Insights into the human mesenchymal stromal/stem cell identity through integrative transcriptomic profiling.

Roson-Burgo B, Sanchez-Guijo F, Del Cañizo C, De Las Rivas J.

BMC Genomics. 2016 Nov 21;17(1):944.

17.

Path2enet: generation of human pathway-derived networks in an expression specific context.

Droste C, De Las Rivas J.

BMC Genomics. 2016 Oct 25;17(Suppl 8):731.

18.

Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes.

Lopes KP, Campos-Laborie FJ, Vialle RA, Ortega JM, De Las Rivas J.

BMC Genomics. 2016 Oct 25;17(Suppl 8):725.

19.

Matrix-Gla protein promotes osteosarcoma lung metastasis and associates with poor prognosis.

Zandueta C, Ormazábal C, Perurena N, Martínez-Canarias S, Zalacaín M, Julián MS, Grigoriadis AE, Valencia K, Campos-Laborie FJ, Rivas Jde L, Vicent S, Patiño-García A, Lecanda F.

J Pathol. 2016 Aug;239(4):438-49. doi: 10.1002/path.4740. Epub 2016 Jun 29.

PMID:
27172275
20.

APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks.

Alonso-López D, Gutiérrez MA, Lopes KP, Prieto C, Santamaría R, De Las Rivas J.

Nucleic Acids Res. 2016 Jul 8;44(W1):W529-35. doi: 10.1093/nar/gkw363. Epub 2016 Apr 30.

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