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Items: 1 to 20 of 116

1.

Gene network analysis identifies rumen epithelial cell proliferation, differentiation and metabolic pathways perturbed by diet and correlated with methane production.

Xiang R, McNally J, Rowe S, Jonker A, Pinares-Patino CS, Oddy VH, Vercoe PE, McEwan JC, Dalrymple BP.

Sci Rep. 2016 Dec 14;6:39022. doi: 10.1038/srep39022.

2.

Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues.

Xiang R, Oddy VH, Archibald AL, Vercoe PE, Dalrymple BP.

PeerJ. 2016 Mar 8;4:e1762. doi: 10.7717/peerj.1762. eCollection 2016.

3.

Beta-globin gene evolution in the ruminants: evidence for an ancient origin of sheep haplotype B.

Jiang Y, Wang X, Kijas JW, Dalrymple BP.

Anim Genet. 2015 Oct;46(5):506-14. doi: 10.1111/age.12318. Epub 2015 Jun 19.

PMID:
26096044
4.

Transcriptome analysis of cattle muscle identifies potential markers for skeletal muscle growth rate and major cell types.

Guo B, Greenwood PL, Cafe LM, Zhou G, Zhang W, Dalrymple BP.

BMC Genomics. 2015 Mar 13;16:177. doi: 10.1186/s12864-015-1403-x.

5.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium..

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.

6.

Longitudinal muscle gene expression patterns associated with differential intramuscular fat in cattle.

Hudson NJ, Reverter A, Greenwood PL, Guo B, Cafe LM, Dalrymple BP.

Animal. 2015 Apr;9(4):650-9. doi: 10.1017/S1751731114002754. Epub 2014 Nov 13.

PMID:
25391663
7.

Selection signatures in worldwide sheep populations.

Fariello MI, Servin B, Tosser-Klopp G, Rupp R, Moreno C; International Sheep Genomics Consortium., San Cristobal M, Boitard S.

PLoS One. 2014 Aug 15;9(8):e103813. doi: 10.1371/journal.pone.0103813. eCollection 2014.

8.

A gene expression estimator of intramuscular fat percentage for use in both cattle and sheep.

Guo B, Kongsuwan K, Greenwood PL, Zhou G, Zhang W, Dalrymple BP.

J Anim Sci Biotechnol. 2014 Jun 16;5(1):35. doi: 10.1186/2049-1891-5-35. eCollection 2014.

9.

The sheep genome illuminates biology of the rumen and lipid metabolism.

Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, Searle SM, Adelson DL, Bian C, Cam GR, Chen Y, Cheng S, DeSilva U, Dixen K, Dong Y, Fan G, Franklin IR, Fu S, Fuentes-Utrilla P, Guan R, Highland MA, Holder ME, Huang G, Ingham AB, Jhangiani SN, Kalra D, Kovar CL, Lee SL, Liu W, Liu X, Lu C, Lv T, Mathew T, McWilliam S, Menzies M, Pan S, Robelin D, Servin B, Townley D, Wang W, Wei B, White SN, Yang X, Ye C, Yue Y, Zeng P, Zhou Q, Hansen JB, Kristiansen K, Gibbs RA, Flicek P, Warkup CC, Jones HE, Oddy VH, Nicholas FW, McEwan JC, Kijas JW, Wang J, Worley KC, Archibald AL, Cockett N, Xu X, Wang W, Dalrymple BP.

Science. 2014 Jun 6;344(6188):1168-73. doi: 10.1126/science.1252806.

10.

SNPs for parentage testing and traceability in globally diverse breeds of sheep.

Heaton MP, Leymaster KA, Kalbfleisch TS, Kijas JW, Clarke SM, McEwan J, Maddox JF, Basnayake V, Petrik DT, Simpson B, Smith TP, Chitko-McKown CG; International Sheep Genomics Consortium..

PLoS One. 2014 Apr 16;9(4):e94851. doi: 10.1371/journal.pone.0094851. eCollection 2014.

11.

RNF14 is a regulator of mitochondrial and immune function in muscle.

Ingham AB, Osborne SA, Menzies M, Briscoe S, Chen W, Kongsuwan K, Reverter A, Jeanes A, Dalrymple BP, Wijffels G, Seymour R, Hudson NJ.

BMC Syst Biol. 2014 Jan 29;8:10. doi: 10.1186/1752-0509-8-10.

12.

Development and optimization of hardware for delta relaxation enhanced MRI.

Harris CT, Handler WB, Araya Y, Martínez-Santiesteban F, Alford JK, Dalrymple B, Van Sas F, Chronik BA, Scholl TJ.

Magn Reson Med. 2014 Oct;72(4):1182-90. doi: 10.1002/mrm.25014. Epub 2013 Nov 11.

PMID:
24407990
13.

New head gradient coil design and construction techniques.

Handler WB, Harris CT, Scholl TJ, Parker DL, Goodrich KC, Dalrymple B, Van Sass F, Chronik BA.

J Magn Reson Imaging. 2014 May;39(5):1088-95. doi: 10.1002/jmri.24254. Epub 2013 Oct 9.

14.

A divergent Artiodactyl MYADM-like repeat is associated with erythrocyte traits and weight of lamb weaned in domestic sheep.

Gonzalez MV, Mousel MR, Herndon DR, Jiang Y, Dalrymple BP, Reynolds JO, Johnson WC, Herrmann-Hoesing LM, White SN.

PLoS One. 2013 Aug 30;8(8):e74700. doi: 10.1371/journal.pone.0074700. eCollection 2013.

15.

Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data.

Hudson NJ, Lyons RE, Reverter A, Greenwood PL, Dalrymple BP.

Gene Expr Patterns. 2013 Mar-Apr;13(3-4):109-25. doi: 10.1016/j.gep.2013.02.001. Epub 2013 Feb 16.

PMID:
23419240
16.

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep.

Heaton MP, Kalbfleisch TS, Petrik DT, Simpson B, Kijas JW, Clawson ML, Chitko-McKown CG, Harhay GP, Leymaster KA; International Sheep Genomics Consortium..

PLoS One. 2013;8(2):e55490. doi: 10.1371/journal.pone.0055490. Epub 2013 Feb 11.

17.

Gene expression phenotypes for lipid metabolism and intramuscular fat in skeletal muscle of cattle.

De Jager N, Hudson NJ, Reverter A, Barnard R, Cafe LM, Greenwood PL, Dalrymple BP.

J Anim Sci. 2013 Mar;91(3):1112-28. doi: 10.2527/jas.2012-5409. Epub 2013 Jan 7.

18.

An Always Correlated gene expression landscape for ovine skeletal muscle, lessons learnt from comparison with an "equivalent" bovine landscape.

Sun W, Hudson NJ, Reverter A, Waardenberg AJ, Tellam RL, Vuocolo T, Byrne K, Dalrymple BP.

BMC Res Notes. 2012 Nov 13;5:632. doi: 10.1186/1756-0500-5-632.

19.

Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome.

Pérez-Montarelo D, Hudson NJ, Fernández AI, Ramayo-Caldas Y, Dalrymple BP, Reverter A.

PLoS One. 2012;7(9):e46159. doi: 10.1371/journal.pone.0046159. Epub 2012 Sep 26.

20.

Beyond differential expression: the quest for causal mutations and effector molecules.

Hudson NJ, Dalrymple BP, Reverter A.

BMC Genomics. 2012 Jul 31;13:356.

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