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Items: 14


Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation.

Mondal M, Casals F, Xu T, Dall'Olio GM, Pybus M, Netea MG, Comas D, Laayouni H, Li Q, Majumder PP, Bertranpetit J.

Nat Genet. 2016 Sep;48(9):1066-70. doi: 10.1038/ng.3621. Epub 2016 Jul 25.


NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings.

An O, Dall'Olio GM, Mourikis TP, Ciccarelli FD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D992-9. doi: 10.1093/nar/gkv1123. Epub 2015 Oct 29.


Hierarchical boosting: a machine-learning framework to detect and classify hard selective sweeps in human populations.

Pybus M, Luisi P, Dall'Olio GM, Uzkudun M, Laayouni H, Bertranpetit J, Engelken J.

Bioinformatics. 2015 Dec 15;31(24):3946-52. doi: 10.1093/bioinformatics/btv493. Epub 2015 Aug 26.


VCF2Networks: applying genotype networks to single-nucleotide variants data.

Dall'Olio GM, Vahdati AR, Bertranpetit J, Wagner A, Laayouni H.

Bioinformatics. 2015 Feb 1;31(3):438-9. doi: 10.1093/bioinformatics/btu650. Epub 2014 Oct 4.


Human genome variation and the concept of genotype networks.

Dall'Olio GM, Bertranpetit J, Wagner A, Laayouni H.

PLoS One. 2014 Jun 9;9(6):e99424. doi: 10.1371/journal.pone.0099424. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e107347.


1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans.

Pybus M, Dall'Olio GM, Luisi P, Uzkudun M, Carreño-Torres A, Pavlidis P, Laayouni H, Bertranpetit J, Engelken J.

Nucleic Acids Res. 2014 Jan;42(Database issue):D903-9. doi: 10.1093/nar/gkt1188. Epub 2013 Nov 25.


Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation.

Dall'Olio GM, Laayouni H, Luisi P, Sikora M, Montanucci L, Bertranpetit J.

BMC Evol Biol. 2012 Jun 25;12:98. doi: 10.1186/1471-2148-12-98.


Network-level and population genetics analysis of the insulin/TOR signal transduction pathway across human populations.

Luisi P, Alvarez-Ponce D, Dall'Olio GM, Sikora M, Bertranpetit J, Laayouni H.

Mol Biol Evol. 2012 May;29(5):1379-92. doi: 10.1093/molbev/msr298. Epub 2011 Dec 1.


BioStar: an online question & answer resource for the bioinformatics community.

Parnell LD, Lindenbaum P, Shameer K, Dall'Olio GM, Swan DC, Jensen LJ, Cockell SJ, Pedersen BS, Mangan ME, Miller CA, Albert I.

PLoS Comput Biol. 2011 Oct;7(10):e1002216. doi: 10.1371/journal.pcbi.1002216. Epub 2011 Oct 27. No abstract available.


Ten simple rules for getting help from online scientific communities.

Dall'Olio GM, Marino J, Schubert M, Keys KL, Stefan MI, Gillespie CS, Poulain P, Shameer K, Sugar R, Invergo BM, Jensen LJ, Bertranpetit J, Laayouni H.

PLoS Comput Biol. 2011 Sep;7(9):e1002202. doi: 10.1371/journal.pcbi.1002202. Epub 2011 Sep 29. No abstract available.


Similarity in recombination rate estimates highly correlates with genetic differentiation in humans.

Laayouni H, Montanucci L, Sikora M, Melé M, Dall'Olio GM, Lorente-Galdos B, McGee KM, Graffelman J, Awadalla P, Bosch E, Comas D, Navarro A, Calafell F, Casals F, Bertranpetit J.

PLoS One. 2011 Mar 28;6(3):e17913. doi: 10.1371/journal.pone.0017913.


The annotation of the asparagine N-linked glycosylation pathway in the Reactome database.

Dall'Olio GM, Jassal B, Montanucci L, Gagneux P, Bertranpetit J, Laayouni H.

Glycobiology. 2011 Nov;21(11):1395-400. doi: 10.1093/glycob/cwq215. Epub 2011 Jan 2.


The annotation and the usage of scientific databases could be improved with public issue tracker software.

Dall'Olio GM, Bertranpetit J, Laayouni H.

Database (Oxford). 2010 Dec 23;2010:baq035. doi: 10.1093/database/baq035. Print 2010.


Molecular evolution and network-level analysis of the N-glycosylation metabolic pathway across primates.

Montanucci L, Laayouni H, Dall'Olio GM, Bertranpetit J.

Mol Biol Evol. 2011 Jan;28(1):813-23. doi: 10.1093/molbev/msq259. Epub 2010 Oct 5.

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