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Items: 14


The LDB1 Complex Co-opts CTCF for Erythroid Lineage-Specific Long-Range Enhancer Interactions.

Lee J, Krivega I, Dale RK, Dean A.

Cell Rep. 2017 Jun 20;19(12):2490-2502. doi: 10.1016/j.celrep.2017.05.072.


Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes.

Clough E, Jimenez E, Kim YA, Whitworth C, Neville MC, Hempel LU, Pavlou HJ, Chen ZX, Sturgill D, Dale RK, Smith HE, Przytycka TM, Goodwin SF, Van Doren M, Oliver B.

Dev Cell. 2014 Dec 22;31(6):761-73. doi: 10.1016/j.devcel.2014.11.021.


metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA.

Dale RK, Matzat LH, Lei EP.

Nucleic Acids Res. 2014 Aug;42(14):9158-70. doi: 10.1093/nar/gku644. Epub 2014 Jul 24.


Role of LDB1 in the transition from chromatin looping to transcription activation.

Krivega I, Dale RK, Dean A.

Genes Dev. 2014 Jun 15;28(12):1278-90. doi: 10.1101/gad.239749.114. Epub 2014 May 29.


The RNA-binding protein Rumpelstiltskin antagonizes gypsy chromatin insulator function in a tissue-specific manner.

King MR, Matzat LH, Dale RK, Lim SJ, Lei EP.

J Cell Sci. 2014 Jul 1;127(Pt 13):2956-66. doi: 10.1242/jcs.151126. Epub 2014 Apr 4.


Messenger RNA is a functional component of a chromatin insulator complex.

Matzat LH, Dale RK, Lei EP.

EMBO Rep. 2013 Oct;14(10):916-22. doi: 10.1038/embor.2013.118. Epub 2013 Aug 6.


A compendium of RNA-binding motifs for decoding gene regulation.

Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR.

Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311.


Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila.

Lim SJ, Boyle PJ, Chinen M, Dale RK, Lei EP.

Nucleic Acids Res. 2013 Mar 1;41(5):2963-80. doi: 10.1093/nar/gkt037. Epub 2013 Jan 28.


Tissue-specific regulation of chromatin insulator function.

Matzat LH, Dale RK, Moshkovich N, Lei EP.

PLoS Genet. 2012;8(11):e1003069. doi: 10.1371/journal.pgen.1003069. Epub 2012 Nov 29.


CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus.

Junier I, Dale RK, Hou C, Képès F, Dean A.

Nucleic Acids Res. 2012 Sep;40(16):7718-27. doi: 10.1093/nar/gks536. Epub 2012 Jun 16.


Mediation of Drosophila autosomal dosage effects and compensation by network interactions.

Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B.

Genome Biol. 2012 Apr 24;13(4):r28. doi: 10.1186/gb-2012-13-4-r28.


Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells.

Kiefer CM, Lee J, Hou C, Dale RK, Lee YT, Meier ER, Miller JL, Dean A.

Blood. 2011 Dec 1;118(23):6200-8. doi: 10.1182/blood-2011-06-363101. Epub 2011 Oct 18.


Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.

Dale RK, Pedersen BS, Quinlan AR.

Bioinformatics. 2011 Dec 15;27(24):3423-4. doi: 10.1093/bioinformatics/btr539. Epub 2011 Sep 23.


RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function.

Moshkovich N, Nisha P, Boyle PJ, Thompson BA, Dale RK, Lei EP.

Genes Dev. 2011 Aug 15;25(16):1686-701. doi: 10.1101/gad.16651211.

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