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Items: 8

1.

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.

D'Antonio M, D'Onorio De Meo P, Pallocca M, Picardi E, D'Erchia AM, Calogero RA, Castrignanò T, Pesole G.

BMC Genomics. 2015;16:S3. doi: 10.1186/1471-2164-16-S6-S3. Epub 2015 Jun 1.

2.

VDR primary targets by genome-wide transcriptional profiling.

Goeman F, De Nicola F, D'Onorio De Meo P, Pallocca M, Elmi B, Castrignanò T, Pesole G, Strano S, Blandino G, Fanciulli M, Muti P.

J Steroid Biochem Mol Biol. 2014 Sep;143:348-56. doi: 10.1016/j.jsbmb.2014.03.007. Epub 2014 Apr 13.

PMID:
24726990
3.

WEP: a high-performance analysis pipeline for whole-exome data.

D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignanò T.

BMC Bioinformatics. 2013;14 Suppl 7:S11. doi: 10.1186/1471-2105-14-S7-S11. Epub 2013 Apr 22.

4.

SpliceAid-F: a database of human splicing factors and their RNA-binding sites.

Giulietti M, Piva F, D'Antonio M, D'Onorio De Meo P, Paoletti D, Castrignanò T, D'Erchia AM, Picardi E, Zambelli F, Principato G, Pavesi G, Pesole G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D125-31. doi: 10.1093/nar/gks997. Epub 2012 Oct 30.

5.

Transcriptional regulation of miR-224 upregulated in human HCCs by NFκB inflammatory pathways.

Scisciani C, Vossio S, Guerrieri F, Schinzari V, De Iaco R, D'Onorio de Meo P, Cervello M, Montalto G, Pollicino T, Raimondo G, Levrero M, Pediconi N.

J Hepatol. 2012 Apr;56(4):855-61. doi: 10.1016/j.jhep.2011.11.017. Epub 2011 Dec 16.

PMID:
22178270
6.

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.

D'Onorio de Meo P, D'Antonio M, Griggio F, Lupi R, Borsani M, Pavesi G, Castrignanò T, Pesole G, Gissi C.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1168-72. doi: 10.1093/nar/gkr1144. Epub 2011 Nov 28.

7.

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.

Martelli PL, D'Antonio M, Bonizzoni P, Castrignanò T, D'Erchia AM, D'Onorio De Meo P, Fariselli P, Finelli M, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Rossi I, Valletti A, Zauli A, Zambelli F, Casadio R, Pesole G.

Nucleic Acids Res. 2011 Jan;39(Database issue):D80-5. doi: 10.1093/nar/gkq1073. Epub 2010 Nov 4.

8.

The mepsMAP server. Mapping epitopes on protein surface: mining annotated proteins.

Carrabino D, D'Onorio De Meo P, Sanna N, Castrignanò T, Orsini M, Floris M, Tramontano A.

IEEE Trans Nanobioscience. 2007 Jun;6(2):155-61.

PMID:
17695751

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