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Items: 9

1.

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.

Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A.

J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18.

2.

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.

Ruiz JC, D'Afonseca V, Silva A, Ali A, Pinto AC, Santos AR, Rocha AA, Lopes DO, Dorella FA, Pacheco LG, Costa MP, Turk MZ, Seyffert N, Moraes PM, Soares SC, Almeida SS, Castro TL, Abreu VA, Trost E, Baumbach J, Tauch A, Schneider MP, McCulloch J, Cerdeira LT, Ramos RT, Zerlotini A, Dominitini A, Resende DM, Coser EM, Oliveira LM, Pedrosa AL, Vieira CU, Guimarães CT, Bartholomeu DC, Oliveira DM, Santos FR, Rabelo ÉM, Lobo FP, Franco GR, Costa AF, Castro IM, Dias SR, Ferro JA, Ortega JM, Paiva LV, Goulart LR, Almeida JF, Ferro MI, Carneiro NP, Falcão PR, Grynberg P, Teixeira SM, Brommonschenkel S, Oliveira SC, Meyer R, Moore RJ, Miyoshi A, Oliveira GC, Azevedo V.

PLoS One. 2011 Apr 18;6(4):e18551. doi: 10.1371/journal.pone.0018551.

3.

DNA repair in Corynebacterium model.

Resende BC, Rebelato AB, D'Afonseca V, Santos AR, Stutzman T, Azevedo VA, Santos LL, Miyoshi A, Lopes DO.

Gene. 2011 Aug 15;482(1-2):1-7. doi: 10.1016/j.gene.2011.03.008. Epub 2011 Apr 8.

PMID:
21497183
4.

A novel comparative genomics analysis for common drug and vaccine targets in Corynebacterium pseudotuberculosis and other CMN group of human pathogens.

Barh D, Jain N, Tiwari S, Parida BP, D'Afonseca V, Li L, Ali A, Santos AR, Guimarães LC, de Castro Soares S, Miyoshi A, Bhattacharjee A, Misra AN, Silva A, Kumar A, Azevedo V.

Chem Biol Drug Des. 2011 Jul;78(1):73-84. doi: 10.1111/j.1747-0285.2011.01118.x. Epub 2011 May 25.

PMID:
21443692
5.

The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.

Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A.

BMC Genomics. 2010 Dec 30;11:728. doi: 10.1186/1471-2164-11-728.

6.

Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.

Silva A, Schneider MP, Cerdeira L, Barbosa MS, Ramos RT, Carneiro AR, Santos R, Lima M, D'Afonseca V, Almeida SS, Santos AR, Soares SC, Pinto AC, Ali A, Dorella FA, Rocha F, de Abreu VA, Trost E, Tauch A, Shpigel N, Miyoshi A, Azevedo V.

J Bacteriol. 2011 Jan;193(1):323-4. doi: 10.1128/JB.01211-10. Epub 2010 Oct 29.

7.

Survey of genome organization and gene content of Corynebacterium pseudotuberculosis.

D'Afonseca V, Prosdocimi F, Dorella FA, Pacheco LG, Moraes PM, Pena I, Ortega JM, Teixeira S, Oliveira SC, Coser EM, Oliveira LM, Corrêa de Oliveira G, Meyer R, Miyoshi A, Azevedo V.

Microbiol Res. 2010 May 30;165(4):312-20. doi: 10.1016/j.micres.2009.05.009. Epub 2009 Aug 31.

8.

Brazilian genome sequencing projects: state of the art.

Xavier ER, Capanema BP, Ruiz JC, Oliveira G, Meyer R, D'Afonseca V, Miyoshi A, Azevedo V.

Recent Pat DNA Gene Seq. 2008;2(2):111-32. Review.

PMID:
19075951
9.

A description of genes of Corynebacterium pseudotuberculosis useful in diagnostics and vaccine applications.

D'Afonseca V, Moraes PM, Dorella FA, Pacheco LG, Meyer R, Portela RW, Miyoshi A, Azevedo V.

Genet Mol Res. 2008 Mar 18;7(1):252-60. Review.

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