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Items: 1 to 20 of 64

1.

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants.

Pilkington SM, Crowhurst R, Hilario E, Nardozza S, Fraser L, Peng Y, Gunaseelan K, Simpson R, Tahir J, Deroles SC, Templeton K, Luo Z, Davy M, Cheng C, McNeilage M, Scaglione D, Liu Y, Zhang Q, Datson P, De Silva N, Gardiner SE, Bassett H, Chagné D, McCallum J, Dzierzon H, Deng C, Wang YY, Barron L, Manako K, Bowen J, Foster TM, Erridge ZA, Tiffin H, Waite CN, Davies KM, Grierson EP, Laing WA, Kirk R, Chen X, Wood M, Montefiori M, Brummell DA, Schwinn KE, Catanach A, Fullerton C, Li D, Meiyalaghan S, Nieuwenhuizen N, Read N, Prakash R, Hunter D, Zhang H, McKenzie M, Knäbel M, Harris A, Allan AC, Gleave A, Chen A, Janssen BJ, Plunkett B, Ampomah-Dwamena C, Voogd C, Leif D, Lafferty D, Souleyre EJF, Varkonyi-Gasic E, Gambi F, Hanley J, Yao JL, Cheung J, David KM, Warren B, Marsh K, Snowden KC, Lin-Wang K, Brian L, Martinez-Sanchez M, Wang M, Ileperuma N, Macnee N, Campin R, McAtee P, Drummond RSM, Espley RV, Ireland HS, Wu R, Atkinson RG, Karunairetnam S, Bulley S, Chunkath S, Hanley Z, Storey R, Thrimawithana AH, Thomson S, David C, Testolin R, Huang H, Hellens RP, Schaffer RJ.

BMC Genomics. 2018 Apr 16;19(1):257. doi: 10.1186/s12864-018-4656-3.

2.

Assessing changes in functional connectivity in a desert bighorn sheep metapopulation after two generations.

Epps CW, Crowhurst RS, Nickerson BS.

Mol Ecol. 2018 May;27(10):2334-2346. doi: 10.1111/mec.14586. Epub 2018 May 3.

PMID:
29637641
3.

Identification of Postharvest Senescence Regulators Through Map-Based Cloning Using Detached Arabidopsis Inflorescences as a Model Tissue.

Hunter DA, Jibran R, Dijkwel P, Chagné D, Sullivan K, Kanojia A, Crowhurst R.

Methods Mol Biol. 2018;1744:195-220. doi: 10.1007/978-1-4939-7672-0_17.

PMID:
29392668
4.

Assembling large genomes: analysis of the stick insect (Clitarchus hookeri) genome reveals a high repeat content and sex-biased genes associated with reproduction.

Wu C, Twort VG, Crowhurst RN, Newcomb RD, Buckley TR.

BMC Genomics. 2017 Nov 16;18(1):884. doi: 10.1186/s12864-017-4245-x.

5.

Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution.

Wu C, Jordan MD, Newcomb RD, Gemmell NJ, Bank S, Meusemann K, Dearden PK, Duncan EJ, Grosser S, Rutherford K, Gardner PP, Crowhurst RN, Steinwender B, Tooman LK, Stevens MI, Buckley TR.

BMC Genomics. 2017 Oct 17;18(1):795. doi: 10.1186/s12864-017-4197-1.

6.

Simulating the spread of selection-driven genotypes using landscape resistance models for desert bighorn sheep.

Creech TG, Epps CW, Landguth EL, Wehausen JD, Crowhurst RS, Holton B, Monello RJ.

PLoS One. 2017 May 2;12(5):e0176960. doi: 10.1371/journal.pone.0176960. eCollection 2017.

7.

The Onion (Allium cepa L.) R2R3-MYB Gene MYB1 Regulates Anthocyanin Biosynthesis.

Schwinn KE, Ngo H, Kenel F, Brummell DA, Albert NW, McCallum JA, Pither-Joyce M, Crowhurst RN, Eady C, Davies KM.

Front Plant Sci. 2016 Dec 9;7:1865. doi: 10.3389/fpls.2016.01865. eCollection 2016.

8.

Using simulations to evaluate Mantel-based methods for assessing landscape resistance to gene flow.

Zeller KA, Creech TG, Millette KL, Crowhurst RS, Long RA, Wagner HH, Balkenhol N, Landguth EL.

Ecol Evol. 2016 May 21;6(12):4115-28. doi: 10.1002/ece3.2154. eCollection 2016 Jun.

9.

De Novo Transcriptome Analysis of the Common New Zealand Stick Insect Clitarchus hookeri (Phasmatodea) Reveals Genes Involved in Olfaction, Digestion and Sexual Reproduction.

Wu C, Crowhurst RN, Dennis AB, Twort VG, Liu S, Newcomb RD, Ross HA, Buckley TR.

PLoS One. 2016 Jun 23;11(6):e0157783. doi: 10.1371/journal.pone.0157783. eCollection 2016.

10.

Odorant Receptors of the New Zealand Endemic Leafroller Moth Species Planotortrix octo and P. excessana.

Steinwender B, Thrimawithana AH, Crowhurst R, Newcomb RD.

PLoS One. 2016 Mar 22;11(3):e0152147. doi: 10.1371/journal.pone.0152147. eCollection 2016.

11.

Ascochyta blight disease of pea (Pisum sativum L.): defence-related candidate genes associated with QTL regions and identification of epistatic QTL.

Timmerman-Vaughan GM, Moya L, Frew TJ, Murray SR, Crowhurst R.

Theor Appl Genet. 2016 May;129(5):879-96. doi: 10.1007/s00122-016-2669-3. Epub 2016 Jan 22.

PMID:
26801334
12.

A microRNA allele that emerged prior to apple domestication may underlie fruit size evolution.

Yao JL, Xu J, Cornille A, Tomes S, Karunairetnam S, Luo Z, Bassett H, Whitworth C, Rees-George J, Ranatunga C, Snirc A, Crowhurst R, de Silva N, Warren B, Deng C, Kumar S, Chagné D, Bus VG, Volz RK, Rikkerink EH, Gardiner SE, Giraud T, MacDiarmid R, Gleave AP.

Plant J. 2015 Oct;84(2):417-27. doi: 10.1111/tpj.13021.

13.

Staying green postharvest: how three mutations in the Arabidopsis chlorophyll b reductase gene NYC1 delay degreening by distinct mechanisms.

Jibran R, Sullivan KL, Crowhurst R, Erridge ZA, Chagné D, McLachlan AR, Brummell DA, Dijkwel PP, Hunter DA.

J Exp Bot. 2015 Nov;66(21):6849-62. doi: 10.1093/jxb/erv390. Epub 2015 Aug 10.

PMID:
26261268
14.

Characterisation of betalain biosynthesis in Parakeelya flowers identifies the key biosynthetic gene DOD as belonging to an expanded LigB gene family that is conserved in betalain-producing species.

Chung HH, Schwinn KE, Ngo HM, Lewis DH, Massey B, Calcott KE, Crowhurst R, Joyce DC, Gould KS, Davies KM, Harrison DK.

Front Plant Sci. 2015 Jul 7;6:499. doi: 10.3389/fpls.2015.00499. eCollection 2015.

15.

The Peripheral Olfactory Repertoire of the Lightbrown Apple Moth, Epiphyas postvittana.

Corcoran JA, Jordan MD, Thrimawithana AH, Crowhurst RN, Newcomb RD.

PLoS One. 2015 May 27;10(5):e0128596. doi: 10.1371/journal.pone.0128596. eCollection 2015.

16.

Genomes of 'Candidatus Liberibacter solanacearum' Haplotype A from New Zealand and the United States Suggest Significant Genome Plasticity in the Species.

Thompson SM, Johnson CP, Lu AY, Frampton RA, Sullivan KL, Fiers MW, Crowhurst RN, Pitman AR, Scott IA, Wen A, Gudmestad NC, Smith GR.

Phytopathology. 2015 Jul;105(7):863-71. doi: 10.1094/PHYTO-12-14-0363-FI. Epub 2015 Jul 9.

17.

The extremophile Nicotiana benthamiana has traded viral defence for early vigour.

Bally J, Nakasugi K, Jia F, Jung H, Ho SY, Wong M, Paul CM, Naim F, Wood CC, Crowhurst RN, Hellens RP, Dale JL, Waterhouse PM.

Nat Plants. 2015 Nov 2;1:15165. doi: 10.1038/nplants.2015.165.

PMID:
27251536
18.

Pheromone receptor evolution in the cryptic leafroller species, Ctenopseustis obliquana and C. herana.

Steinwender B, Thrimawithana AH, Crowhurst RN, Newcomb RD.

J Mol Evol. 2015 Jan;80(1):42-56. doi: 10.1007/s00239-014-9650-z. Epub 2014 Sep 25.

PMID:
25252791
19.

The draft genome sequence of European pear (Pyrus communis L. 'Bartlett').

Chagné D, Crowhurst RN, Pindo M, Thrimawithana A, Deng C, Ireland H, Fiers M, Dzierzon H, Cestaro A, Fontana P, Bianco L, Lu A, Storey R, Knäbel M, Saeed M, Montanari S, Kim YK, Nicolini D, Larger S, Stefani E, Allan AC, Bowen J, Harvey I, Johnston J, Malnoy M, Troggio M, Perchepied L, Sawyer G, Wiedow C, Won K, Viola R, Hellens RP, Brewer L, Bus VG, Schaffer RJ, Gardiner SE, Velasco R.

PLoS One. 2014 Apr 3;9(4):e92644. doi: 10.1371/journal.pone.0092644. eCollection 2014.

20.

Local extinction and unintentional rewilding of bighorn sheep (Ovis canadensis) on a desert island.

Wilder BT, Betancourt JL, Epps CW, Crowhurst RS, Mead JI, Ezcurra E.

PLoS One. 2014 Mar 19;9(3):e91358. doi: 10.1371/journal.pone.0091358. eCollection 2014.

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