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Items: 1 to 20 of 52


Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus).

Schroeder H, Cronn R, Yanbaev Y, Jennings T, Mader M, Degen B, Kersten B.

PLoS One. 2016 Jun 28;11(6):e0158221. doi: 10.1371/journal.pone.0158221. eCollection 2016.


Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome.

Syring JV, Tennessen JA, Jennings TN, Wegrzyn J, Scelfo-Dalbey C, Cronn R.

Front Plant Sci. 2016 Apr 21;7:484. doi: 10.3389/fpls.2016.00484. eCollection 2016.


Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing.

Staton M, Best T, Khodwekar S, Owusu S, Xu T, Xu Y, Jennings T, Cronn R, Arumuganathan AK, Coggeshall M, Gailing O, Liang H, Romero-Severson J, Schlarbaum S, Carlson JE.

PLoS One. 2015 Dec 23;10(12):e0145031. doi: 10.1371/journal.pone.0145031. eCollection 2015.


Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae).

Schmickl R, Liston A, Zeisek V, Oberlander K, Weitemier K, Straub SC, Cronn RC, Dreyer LL, Suda J.

Mol Ecol Resour. 2016 Sep;16(5):1124-35. doi: 10.1111/1755-0998.12487. Epub 2015 Dec 15.


Fragaria: a genus with deep historical roots and ripe for evolutionary and ecological insights.

Liston A, Cronn R, Ashman TL.

Am J Bot. 2014 Oct;101(10):1686-99. doi: 10.3732/ajb.1400140. Epub 2014 Sep 17. Review.


Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics.

Weitemier K, Straub SC, Cronn RC, Fishbein M, Schmickl R, McDonnell A, Liston A.

Appl Plant Sci. 2014 Aug 29;2(9). pii: apps.1400042. doi: 10.3732/apps.1400042. eCollection 2014 Sep.


Microsatellite primers for the Pacific Northwest conifer Callitropsis nootkatensis (Cupressaceae).

Jennings TN, Knaus BJ, Alderman K, Hennon PE, D'Amore DV, Cronn R.

Appl Plant Sci. 2013 Sep 2;1(9). pii: apps.1300025. doi: 10.3732/apps.1300025. eCollection 2013 Sep.


An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines.

DeGiorgio M, Syring J, Eckert AJ, Liston A, Cronn R, Neale DB, Rosenberg NA.

BMC Evol Biol. 2014 Mar 29;14:67. doi: 10.1186/1471-2148-14-67.


Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae).

Straub SC, Cronn RC, Edwards C, Fishbein M, Liston A.

Genome Biol Evol. 2013;5(10):1872-85. doi: 10.1093/gbe/evt140.


A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation.

Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF.

BMC Genomics. 2013 Feb 28;14:137. doi: 10.1186/1471-2164-14-137.


Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing.

Alexander A, Steel D, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS.

Genome Biol Evol. 2013;5(1):113-29. doi: 10.1093/gbe/evs126.


Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing.

Njuguna W, Liston A, Cronn R, Ashman TL, Bassil N.

Mol Phylogenet Evol. 2013 Jan;66(1):17-29. doi: 10.1016/j.ympev.2012.08.026. Epub 2012 Sep 14.


Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae).

Parks M, Cronn R, Liston A.

BMC Evol Biol. 2012 Jun 25;12:100. doi: 10.1186/1471-2148-12-100.


Targeted enrichment strategies for next-generation plant biology.

Cronn R, Knaus BJ, Liston A, Maughan PJ, Parks M, Syring JV, Udall J.

Am J Bot. 2012 Feb;99(2):291-311. doi: 10.3732/ajb.1100356. Epub 2012 Feb 6.


Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.

Straub SC, Parks M, Weitemier K, Fishbein M, Cronn RC, Liston A.

Am J Bot. 2012 Feb;99(2):349-64. doi: 10.3732/ajb.1100335. Epub 2011 Dec 14.


Microsatellite primers for the Pacific Northwest endemic conifer Chamaecyparis lawsoniana (Cupressaceae).

Jennings TN, Knaus BJ, Kolpak S, Cronn R.

Am J Bot. 2011 Nov;98(11):e323-5. doi: 10.3732/ajb.1100317. Epub 2011 Oct 19.


Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata).

Bajgain P, Richardson BA, Price JC, Cronn RC, Udall JA.

BMC Genomics. 2011 Jul 18;12:370. doi: 10.1186/1471-2164-12-370.


Newly developed primers for complete ycf1 amplification in Pinus (Pinaceae) chloroplasts with possible family-wide utility.

Parks M, Liston A, Cronn R.

Am J Bot. 2011 Jul;98(7):e185-8. doi: 10.3732/ajb.1100088. Epub 2011 Jun 17.


Multiplexed microsatellite recovery using massively parallel sequencing.

Jennings TN, Knaus BJ, Mullins TD, Haig SM, Cronn RC.

Mol Ecol Resour. 2011 Nov;11(6):1060-7. doi: 10.1111/j.1755-0998.2011.03033.x. Epub 2011 Jun 16.


Development of novel chloroplast microsatellite markers to identify species in the Agrostis complex (Poaceae) and related genera.

Zapiola ML, Cronn RC, Mallory-Smith CA.

Mol Ecol Resour. 2010 Jul;10(4):738-40. doi: 10.1111/j.1755-0998.2009.02828.x. Epub 2010 Jan 20.

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