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Items: 1 to 20 of 125

1.

A Bayesian Decision-Support Tool for Child Sexual Abuse Assessment and Investigation.

Tadei A, Pensar J, Corander J, Finnilä K, Santtila P, Antfolk J.

Sex Abuse. 2017 Sep 1:1079063217732791. doi: 10.1177/1079063217732791. [Epub ahead of print]

PMID:
28933247
2.

Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs.

Flahou B, Rossi M, Bakker J, Langermans JA, Heuvelman E, Solnick JV, Martin ME, O'Rourke J, Ngoan LD, Hoa NX, Nakamura M, Øverby A, Matsui H, Ota H, Matsumoto T, Foss DL, Kopta LA, Omotosho O, Franciosini MP, Casagrande Proietti P, Guo A, Liu H, Borilova G, Bracarense AP, Lindén SK, De Bruyckere S, Zhang G, De Witte C, Smet A, Pasmans F, Ducatelle R, Corander J, Haesebrouck F.

ISME J. 2017 Sep 8. doi: 10.1038/ismej.2017.145. [Epub ahead of print]

PMID:
28885626
3.

Mitogenome Sequencing in the Genus Camelus Reveals Evidence for Purifying Selection and Long-term Divergence between Wild and Domestic Bactrian Camels.

Mohandesan E, Fitak RR, Corander J, Yadamsuren A, Chuluunbat B, Abdelhadi O, Raziq A, Nagy P, Stalder G, Walzer C, Faye B, Burger PA.

Sci Rep. 2017 Aug 30;7(1):9970. doi: 10.1038/s41598-017-08995-8.

4.

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131.

Kallonen T, Brodrick HJ, Harris SR, Corander J, Brown NM, Martin V, Peacock SJ, Parkhill J.

Genome Res. 2017 Jul 18. doi: 10.1101/gr.216606.116. [Epub ahead of print]

5.

Bayesian inference of physiologically meaningful parameters from body sway measurements.

Tietäväinen A, Gutmann MU, Keski-Vakkuri E, Corander J, Hæggström E.

Sci Rep. 2017 Jun 19;7(1):3771. doi: 10.1038/s41598-017-02372-1.

6.

Genetic effects on life-history traits in the Glanville fritillary butterfly.

Duplouy A, Wong SC, Corander J, Lehtonen R, Hanski I.

PeerJ. 2017 May 25;5:e3371. doi: 10.7717/peerj.3371. eCollection 2017.

7.

Progression and mortality of interstitial lung disease in mixed connective tissue disease: a long-term observational nationwide cohort study.

Reiseter S, Gunnarsson R, Mogens Aaløkken T, Brit Lund M, Mynarek G, Corander J, Haydon J, Molberg Ø.

Rheumatology (Oxford). 2017 Mar 29. doi: 10.1093/rheumatology/kex077. [Epub ahead of print]

PMID:
28379478
8.

Bayesian identification of bacterial strains from sequencing data.

Sankar A, Malone B, Bayliss SC, Pascoe B, Méric G, Hitchings MD, Sheppard SK, Feil EJ, Corander J, Honkela A.

Microb Genom. 2016 Aug 25;2(8):e000075. doi: 10.1099/mgen.0.000075. eCollection 2016 Aug.

9.

Response to 'Refined analyses suggest that recombination is a minor source of genomic diversity in Pseudomonas aeruginosa chronic cystic fibrosis infections' by ).

Darch SE, McNally A, Corander J, Diggle SP.

Microb Genom. 2016 Mar 2;2(3):e000054. doi: 10.1099/mgen.0.000054. eCollection 2016 Mar. No abstract available.

10.

Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion.

Llarena AK, Zhang J, Vehkala M, Välimäki N, Hakkinen M, Hänninen ML, Roasto M, Mäesaar M, Taboada E, Barker D, Garofolo G, Cammà C, Di Giannatale E, Corander J, Rossi M.

Microb Genom. 2016 Oct 21;2(10):e000088. doi: 10.1099/mgen.0.000088. eCollection 2016 Oct.

11.

Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus.

Murray S, Pascoe B, Méric G, Mageiros L, Yahara K, Hitchings MD, Friedmann Y, Wilkinson TS, Gormley FJ, Mack D, Bray JE, Lamble S, Bowden R, Jolley KA, Maiden MCJ, Wendlandt S, Schwarz S, Corander J, Fitzgerald JR, Sheppard SK.

Genome Biol Evol. 2017 Apr 1;9(4):830-842. doi: 10.1093/gbe/evx037.

12.

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.

Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J.

PLoS Genet. 2017 Feb 16;13(2):e1006508. doi: 10.1371/journal.pgen.1006508. eCollection 2017 Feb.

13.

Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.

Mostowy R, Croucher NJ, Andam CP, Corander J, Hanage WP, Marttinen P.

Mol Biol Evol. 2017 May 1;34(5):1167-1182. doi: 10.1093/molbev/msx066.

14.

Fundamentals and Recent Developments in Approximate Bayesian Computation.

Lintusaari J, Gutmann MU, Dutta R, Kaski S, Corander J.

Syst Biol. 2017 Jan 1;66(1):e66-e82. doi: 10.1093/sysbio/syw077.

PMID:
28175922
15.

Global and regional dissemination and evolution of Burkholderia pseudomallei.

Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, Spratt BG, Corander J, Keim P, Dougan G, Dance DA, Currie BJ, Parkhill J, Peacock SJ.

Nat Microbiol. 2017 Jan 23;2:16263. doi: 10.1038/nmicrobiol.2016.263.

16.

On the inconsistency of ℓ 1-penalised sparse precision matrix estimation.

Heinävaara O, Leppä-Aho J, Corander J, Honkela A.

BMC Bioinformatics. 2016 Dec 13;17(Suppl 16):448. doi: 10.1186/s12859-016-1309-x.

17.

Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.

Andam CP, Mitchell PK, Callendrello A, Chang Q, Corander J, Chaguza C, McGee L, Beall BW, Hanage WP.

J Clin Microbiol. 2017 Apr;55(4):1104-1115. doi: 10.1128/JCM.02453-16. Epub 2017 Jan 18.

PMID:
28100596
18.

Understanding pneumococcal serotype 1 biology through population genomic analysis.

Chaguza C, Cornick JE, Harris SR, Andam CP, Bricio-Moreno L, Yang M, Yalcin F, Ousmane S, Govindpersad S, Senghore M, Ebruke C, Du Plessis M, Kiran AM, Pluschke G, Sigauque B, McGee L, Klugman KP, Turner P, Corander J, Parkhill J, Collard JM, Antonio M, von Gottberg A, Heyderman RS, French N, Kadioglu A, Hanage WP, Everett DB, Bentley SD; PAGe Consortium.

BMC Infect Dis. 2016 Nov 8;16(1):649.

19.

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Sieberts SK, Zhu F, García-García J, Stahl E, Pratap A, Pandey G, Pappas D, Aguilar D, Anton B, Bonet J, Eksi R, Fornés O, Guney E, Li H, Marín MA, Panwar B, Planas-Iglesias J, Poglayen D, Cui J, Falcao AO, Suver C, Hoff B, Balagurusamy VS, Dillenberger D, Neto EC, Norman T, Aittokallio T, Ammad-Ud-Din M, Azencott CA, Bellón V, Boeva V, Bunte K, Chheda H, Cheng L, Corander J, Dumontier M, Goldenberg A, Gopalacharyulu P, Hajiloo M, Hidru D, Jaiswal A, Kaski S, Khalfaoui B, Khan SA, Kramer ER, Marttinen P, Mezlini AM, Molparia B, Pirinen M, Saarela J, Samwald M, Stoven V, Tang H, Tang J, Torkamani A, Vert JP, Wang B, Wang T, Wennerberg K, Wineinger NE, Xiao G, Xie Y, Yeung R, Zhan X, Zhao C; Members of the Rheumatoid Arthritis Challenge Consortium, Greenberg J, Kremer J, Michaud K, Barton A, Coenen M, Mariette X, Miceli C, Shadick N, Weinblatt M, de Vries N, Tak PP, Gerlag D, Huizinga TW, Kurreeman F, Allaart CF, Bridges SL Jr, Criswell L, Moreland L, Klareskog L, Saevarsdottir S, Padyukov L, Gregersen PK, Friend S, Plenge R, Stolovitzky G, Oliva B, Guan Y, Mangravite LM.

Nat Commun. 2016 Oct 10;7:13205. doi: 10.1038/ncomms13205. No abstract available.

20.

Identifying Multiple Potential Metabolic Cycles in Time-Series from Biolog Experiments.

Shubin M, Schaufler K, Tedin K, Vehkala M, Corander J.

PLoS One. 2016 Sep 27;11(9):e0162276. doi: 10.1371/journal.pone.0162276. eCollection 2016.

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