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Genetic Mapping Populations for Conducting High-Resolution Trait Mapping in Plants.

Cockram J, Mackay I.

Adv Biochem Eng Biotechnol. 2018 Feb 23. doi: 10.1007/10_2017_48. [Epub ahead of print]


TEOSINTE BRANCHED1 Regulates Inflorescence Architecture and Development in Bread Wheat (Triticum aestivum).

Dixon LE, Greenwood JR, Bencivenga S, Zhang P, Cockram J, Mellers G, Ramm K, Cavanagh C, Swain SM, Boden SA.

Plant Cell. 2018 Mar;30(3):563-581. doi: 10.1105/tpc.17.00961. Epub 2018 Feb 14.


Systematic Investigation of FLOWERING LOCUS T-Like Poaceae Gene Families Identifies the Short-Day Expressed Flowering Pathway Gene, TaFT3 in Wheat (Triticum aestivum L.).

Halliwell J, Borrill P, Gordon A, Kowalczyk R, Pagano ML, Saccomanno B, Bentley AR, Uauy C, Cockram J.

Front Plant Sci. 2016 Jun 22;7:857. doi: 10.3389/fpls.2016.00857. eCollection 2016.


Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population.

Cockram J, Scuderi A, Barber T, Furuki E, Gardner KA, Gosman N, Kowalczyk R, Phan HP, Rose GA, Tan KC, Oliver RP, Mackay IJ.

G3 (Bethesda). 2015 Sep 28;5(11):2257-66. doi: 10.1534/g3.115.021584.


Global agricultural intensification during climate change: a role for genomics.

Abberton M, Batley J, Bentley A, Bryant J, Cai H, Cockram J, de Oliveira AC, Cseke LJ, Dempewolf H, De Pace C, Edwards D, Gepts P, Greenland A, Hall AE, Henry R, Hori K, Howe GT, Hughes S, Humphreys M, Lightfoot D, Marshall A, Mayes S, Nguyen HT, Ogbonnaya FC, Ortiz R, Paterson AH, Tuberosa R, Valliyodan B, Varshney RK, Yano M.

Plant Biotechnol J. 2016 Apr;14(4):1095-8. doi: 10.1111/pbi.12467. Epub 2015 Sep 11. Review.


Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects.

Kole C, Muthamilarasan M, Henry R, Edwards D, Sharma R, Abberton M, Batley J, Bentley A, Blakeney M, Bryant J, Cai H, Cakir M, Cseke LJ, Cockram J, de Oliveira AC, De Pace C, Dempewolf H, Ellison S, Gepts P, Greenland A, Hall A, Hori K, Hughes S, Humphreys MW, Iorizzo M, Ismail AM, Marshall A, Mayes S, Nguyen HT, Ogbonnaya FC, Ortiz R, Paterson AH, Simon PW, Tohme J, Tuberosa R, Valliyodan B, Varshney RK, Wullschleger SD, Yano M, Prasad M.

Front Plant Sci. 2015 Aug 11;6:563. doi: 10.3389/fpls.2015.00563. eCollection 2015. Review.


Discovery, evaluation and distribution of haplotypes and new alleles of the Photoperiod-A1 gene in wheat.

Muterko A, Kalendar R, Cockram J, Balashova I.

Plant Mol Biol. 2015 May;88(1-2):149-64. doi: 10.1007/s11103-015-0313-2. Epub 2015 Apr 8.


Applying association mapping and genomic selection to the dissection of key traits in elite European wheat.

Bentley AR, Scutari M, Gosman N, Faure S, Bedford F, Howell P, Cockram J, Rose GA, Barber T, Irigoyen J, Horsnell R, Pumfrey C, Winnie E, Schacht J, Beauchêne K, Praud S, Greenland A, Balding D, Mackay IJ.

Theor Appl Genet. 2014 Dec;127(12):2619-33. doi: 10.1007/s00122-014-2403-y. Epub 2014 Oct 2.


An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation.

Mackay IJ, Bansept-Basler P, Barber T, Bentley AR, Cockram J, Gosman N, Greenland AJ, Horsnell R, Howells R, O'Sullivan DM, Rose GA, Howell PJ.

G3 (Bethesda). 2014 Sep 18;4(9):1603-10. doi: 10.1534/g3.114.012963.


Evaluation of the use of high-density SNP genotyping to implement UPOV Model 2 for DUS testing in barley.

Jones H, Norris C, Smith D, Cockram J, Lee D, O'Sullivan DM, Mackay I.

Theor Appl Genet. 2013 Apr;126(4):901-11. doi: 10.1007/s00122-012-2024-2. Epub 2012 Dec 12.


Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.

Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Bailey PC, O'Sullivan DM.

PLoS One. 2012;7(9):e45307. doi: 10.1371/journal.pone.0045307. Epub 2012 Sep 24.


Evaluation of diagnostic molecular markers for DUS phenotypic assessment in the cereal crop, barley (Hordeum vulgare ssp. vulgare L.).

Cockram J, Jones H, Norris C, O'Sullivan DM.

Theor Appl Genet. 2012 Dec;125(8):1735-49. doi: 10.1007/s00122-012-1950-3. Epub 2012 Aug 17.


Evolutionary history of barley cultivation in Europe revealed by genetic analysis of extant landraces.

Jones H, Civáň P, Cockram J, Leigh FJ, Smith LM, Jones MK, Charles MP, Molina-Cano JL, Powell W, Jones G, Brown TA.

BMC Evol Biol. 2011 Nov 2;11:320. doi: 10.1186/1471-2148-11-320.


Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars.

Wang M, Jiang N, Jia T, Leach L, Cockram J, Comadran J, Shaw P, Waugh R, Luo Z.

Theor Appl Genet. 2012 Feb;124(2):233-46. doi: 10.1007/s00122-011-1697-2. Epub 2011 Sep 14. Erratum in: Theor Appl Genet. 2012 Feb;124(2):247. Comadran, Jordi [added]; Shaw, Paul [added]; Ramsay, Luke [removed]; Thomas, Bill [removed]..


Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae.

Mameaux S, Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Jack P, Werner P, Gray JC, Greenland AJ, Powell W.

Plant Biotechnol J. 2012 Jan;10(1):67-82. doi: 10.1111/j.1467-7652.2011.00645.x. Epub 2011 Aug 15.


Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome.

Cockram J, White J, Zuluaga DL, Smith D, Comadran J, Macaulay M, Luo Z, Kearsey MJ, Werner P, Harrap D, Tapsell C, Liu H, Hedley PE, Stein N, Schulte D, Steuernagel B, Marshall DF, Thomas WT, Ramsay L, Mackay I, Balding DJ; AGOUEB Consortium, Waugh R, O'Sullivan DM.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21611-6. doi: 10.1073/pnas.1010179107. Epub 2010 Nov 29.


Whole-genome association mapping in elite inbred crop varieties.

Waugh R, Marshall D, Thomas B, Comadran J, Russell J, Close T, Stein N, Hayes P, Muehlbauer G, Cockram J, O'Sullivan D, Mackay I, Flavell A; AGOUEB; BarleyCAP, Ramsay L.

Genome. 2010 Nov;53(11):967-72. doi: 10.1139/G10-078.


Segmental chromosomal duplications harbouring group IV CONSTANS-like genes in cereals.

Cockram J, Howells RM, O'Sullivan DM.

Genome. 2010 Mar;53(3):231-40. doi: 10.1139/g09-101.


Questions & answers: Words from the street: delivering on a provincial mandate at the local level.

Cockram J, Fulton-Wallace K.

Healthc Q. 2009;12 Spec No Ontario:40-2. No abstract available.


Association mapping of partitioning loci in barley.

Cockram J, White J, Leigh FJ, Lea VJ, Chiapparino E, Laurie DA, Mackay IJ, Powell W, O'Sullivan DM.

BMC Genet. 2008 Feb 18;9:16. doi: 10.1186/1471-2156-9-16.

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