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Items: 1 to 20 of 123


Genomic regions, cellular components and gene regulatory basis underlying pod length variations in cowpea (V. unguiculata L. Walp).

Xu P, Wu X, Muñoz-Amatriaín M, Wang B, Wu X, Hu Y, Huynh BL, Close TJ, Roberts PA, Zhou W, Lu Z, Li G.

Plant Biotechnol J. 2016 Sep 22. doi: 10.1111/pbi.12639.


Genomic Tools in Cowpea Breeding Programs: Status and Perspectives.

Boukar O, Fatokun CA, Huynh BL, Roberts PA, Close TJ.

Front Plant Sci. 2016 Jun 3;7:757. doi: 10.3389/fpls.2016.00757. eCollection 2016. Review.


A major QTL corresponding to the Rk locus for resistance to root-knot nematodes in cowpea (Vigna unguiculata L. Walp.).

Huynh BL, Matthews WC, Ehlers JD, Lucas MR, Santos JR, Ndeve A, Close TJ, Roberts PA.

Theor Appl Genet. 2016 Jan;129(1):87-95. doi: 10.1007/s00122-015-2611-0. Epub 2015 Oct 8.


Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.


De novo meta-assembly of ultra-deep sequencing data.

Mirebrahim H, Close TJ, Lonardi S.

Bioinformatics. 2015 Jun 15;31(12):i9-16. doi: 10.1093/bioinformatics/btv226.


When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.

Lonardi S, Mirebrahim H, Wanamaker S, Alpert M, Ciardo G, Duma D, Close TJ.

Bioinformatics. 2015 Sep 15;31(18):2972-80. doi: 10.1093/bioinformatics/btv311. Epub 2015 May 20.


CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

Ounit R, Wanamaker S, Close TJ, Lonardi S.

BMC Genomics. 2015 Mar 25;16:236. doi: 10.1186/s12864-015-1419-2.


Introgression of a rare haplotype from Southeastern Africa to breed California blackeyes with larger seeds.

Lucas MR, Huynh BL, Roberts PA, Close TJ.

Front Plant Sci. 2015 Mar 9;6:126. doi: 10.3389/fpls.2015.00126. eCollection 2015.


The barley Uniculme4 gene encodes a BLADE-ON-PETIOLE-like protein that controls tillering and leaf patterning.

Tavakol E, Okagaki R, Verderio G, Shariati J V, Hussien A, Bilgic H, Scanlon MJ, Todt NR, Close TJ, Druka A, Waugh R, Steuernagel B, Ariyadasa R, Himmelbach A, Stein N, Muehlbauer GJ, Rossini L.

Plant Physiol. 2015 May;168(1):164-74. doi: 10.1104/pp.114.252882. Epub 2015 Mar 27.


Genetic mapping and legume synteny of aphid resistance in African cowpea (Vigna unguiculata L. Walp.) grown in California.

Huynh BL, Ehlers JD, Ndeve A, Wanamaker S, Lucas MR, Close TJ, Roberts PA.

Mol Breed. 2015;35:36. Epub 2015 Jan 21.


Identification of candidate genes and molecular markers for heat-induced brown discoloration of seed coats in cowpea [Vigna unguiculata (L.) Walp].

Pottorff M, Roberts PA, Close TJ, Lonardi S, Wanamaker S, Ehlers JD.

BMC Genomics. 2014 May 1;15:328. doi: 10.1186/1471-2164-15-328.


Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R.

Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10.


Genetic architecture of delayed senescence, biomass, and grain yield under drought stress in cowpea.

Muchero W, Roberts PA, Diop NN, Drabo I, Cisse N, Close TJ, Muranaka S, Boukar O, Ehlers JD.

PLoS One. 2013 Jul 30;8(7):e70041. doi: 10.1371/journal.pone.0070041. Print 2013.


A graph-theoretical approach to the selection of the minimum tiling path from a physical map.

Bozdag S, Close TJ, Lonardi S.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):352-60. doi: 10.1109/TCBB.2013.26.


Association Studies and Legume Synteny Reveal Haplotypes Determining Seed Size in Vigna unguiculata.

Lucas MR, Huynh BL, da Silva Vinholes P, Cisse N, Drabo I, Ehlers JD, Roberts PA, Close TJ.

Front Plant Sci. 2013 Apr 15;4:95. doi: 10.3389/fpls.2013.00095. eCollection 2013.


Combinatorial pooling enables selective sequencing of the barley gene space.

Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Bhat PR, Wu Y, Ciardo G, Alsaihati B, Ma Y, Wanamaker S, Resnik J, Bozdag S, Luo MC, Close TJ.

PLoS Comput Biol. 2013 Apr;9(4):e1003010. doi: 10.1371/journal.pcbi.1003010. Epub 2013 Apr 4.


Small RNA profiling reveals phosphorus deficiency as a contributing factor in symptom expression for citrus huanglongbing disease.

Zhao H, Sun R, Albrecht U, Padmanabhan C, Wang A, Coffey MD, Girke T, Wang Z, Close TJ, Roose M, Yokomi RK, Folimonova S, Vidalakis G, Rouse R, Bowman KD, Jin H.

Mol Plant. 2013 Mar;6(2):301-10. doi: 10.1093/mp/sst002. Epub 2013 Jan 5.


A physical, genetic and functional sequence assembly of the barley genome.

International Barley Genome Sequencing Consortium, Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N.

Nature. 2012 Nov 29;491(7426):711-6. doi: 10.1038/nature11543. Epub 2012 Oct 17.


Genetic and physical mapping of candidate genes for resistance to Fusarium oxysporum f.sp. tracheiphilum race 3 in cowpea [Vigna unguiculata (L.) Walp].

Pottorff M, Wanamaker S, Ma YQ, Ehlers JD, Roberts PA, Close TJ.

PLoS One. 2012;7(7):e41600. doi: 10.1371/journal.pone.0041600. Epub 2012 Jul 31.

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