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Two levels of specialization in bacteraemic Escherichia coli strains revealed by their comparison with commensal strains.

Clermont O, Couffignal C, Blanco J, Mentré F, Picard B, Denamur E; COLIVILLE and COLIBAFI groups..

Epidemiol Infect. 2017 Apr;145(5):872-882. doi: 10.1017/S0950268816003010. Epub 2016 Dec 28.


Bacteriophage LM33_P1, a fast-acting weapon against the pandemic ST131-O25b:H4 Escherichia coli clonal complex.

Dufour N, Clermont O, La Combe B, Messika J, Dion S, Khanna V, Denamur E, Ricard JD, Debarbieux L; ColoColi group..

J Antimicrob Chemother. 2016 Nov;71(11):3072-3080. Epub 2016 Jul 7.


Phylogenetic, virulence and antibiotic resistance characteristics of commensal strain populations of Escherichia coli from community subjects in the Paris area in 2010 and evolution over 30 years.

Massot M, Daubié AS, Clermont O, Jauréguy F, Couffignal C, Dahbi G, Mora A, Blanco J, Branger C, Mentré F, Eddi A, Picard B, Denamur E, The Coliville Group.

Microbiology. 2016 Apr;162(4):642-50. doi: 10.1099/mic.0.000242. Epub 2016 Jan 28.


Escherichia coli Population Structure and Antibiotic Resistance at a Buffalo/Cattle Interface in Southern Africa.

Mercat M, Clermont O, Massot M, Ruppe E, de Garine-Wichatitsky M, Miguel E, Valls Fox H, Cornelis D, Andremont A, Denamur E, Caron A.

Appl Environ Microbiol. 2015 Dec 28;82(5):1459-67. doi: 10.1128/AEM.03771-15.


Emergence of Antimicrobial-Resistant Escherichia coli of Animal Origin Spreading in Humans.

Skurnik D, Clermont O, Guillard T, Launay A, Danilchanka O, Pons S, Diancourt L, Lebreton F, Kadlec K, Roux D, Jiang D, Dion S, Aschard H, Denamur M, Cywes-Bentley C, Schwarz S, Tenaillon O, Andremont A, Picard B, Mekalanos J, Brisse S, Denamur E.

Mol Biol Evol. 2016 Apr;33(4):898-914. doi: 10.1093/molbev/msv280. Epub 2015 Nov 26.


Quantitative analysis of commensal Escherichia coli populations reveals host-specific enterotypes at the intra-species level.

Smati M, Clermont O, Bleibtreu A, Fourreau F, David A, Daubié AS, Hignard C, Loison O, Picard B, Denamur E.

Microbiologyopen. 2015 Aug;4(4):604-15. doi: 10.1002/mbo3.266. Epub 2015 May 29.


Lack of dissemination of acquired resistance to β-lactams in small wild mammals around an isolated village in the Amazonian forest.

Grall N, Barraud O, Wieder I, Hua A, Perrier M, Babosan A, Gaschet M, Clermont O, Denamur E, Catzeflis F, Decré D, Ploy MC, Andremont A.

Environ Microbiol Rep. 2015 Oct;7(5):698-708. doi: 10.1111/1758-2229.12289. Epub 2015 Jun 10.


Guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes.

Clermont O, Gordon D, Denamur E.

Microbiology. 2015 May;161(Pt 5):980-8. doi: 10.1099/mic.0.000063. Epub 2015 Feb 24.


The rpoS gene is predominantly inactivated during laboratory storage and undergoes source-sink evolution in Escherichia coli species.

Bleibtreu A, Clermont O, Darlu P, Glodt J, Branger C, Picard B, Denamur E.

J Bacteriol. 2014 Dec;196(24):4276-84. doi: 10.1128/JB.01972-14. Epub 2014 Sep 29.


Escherichia coli bacteremia in children: age and portal of entry are the main predictors of severity.

Burdet C, Clermont O, Bonacorsi S, Laouénan C, Bingen E, Aujard Y, Mentré F, Lefort A, Denamur E; COLIBAFI Group..

Pediatr Infect Dis J. 2014 Aug;33(8):872-9. doi: 10.1097/INF.0000000000000309.


Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain.

Billard-Pomares T, Fouteau S, Jacquet ME, Roche D, Barbe V, Castellanos M, Bouet JY, Cruveiller S, Médigue C, Blanco J, Clermont O, Denamur E, Branger C.

Antimicrob Agents Chemother. 2014 Nov;58(11):6550-7. doi: 10.1128/AAC.03183-14. Epub 2014 Aug 18.


Escherichia coli bacteraemia in pregnant women is life-threatening for foetuses.

Surgers L, Bleibtreu A, Burdet C, Clermont O, Laouénan C, Lefort A, Mentré F, Carbonne B, Bingen E, Meynard JL, Denamur E; COLIBAFI Group..

Clin Microbiol Infect. 2014 Dec;20(12):O1035-41. doi: 10.1111/1469-0691.12742. Epub 2014 Aug 11.


Maternally acquired genotoxic Escherichia coli alters offspring's intestinal homeostasis.

Payros D, Secher T, Boury M, Brehin C, Ménard S, Salvador-Cartier C, Cuevas-Ramos G, Watrin C, Marcq I, Nougayrède JP, Dubois D, Bedu A, Garnier F, Clermont O, Denamur E, Plaisancié P, Theodorou V, Fioramonti J, Olier M, Oswald E.

Gut Microbes. 2014 May-Jun;5(3):313-25. doi: 10.4161/gmic.28932. Epub 2014 Jun 27.


Development of an allele-specific PCR for Escherichia coli B2 sub-typing, a rapid and easy to perform substitute of multilocus sequence typing.

Clermont O, Christenson JK, Daubié AS, Gordon DM, Denamur E.

J Microbiol Methods. 2014 Jun;101:24-7. doi: 10.1016/j.mimet.2014.03.008. Epub 2014 Mar 28.


Escherichia coli bacteraemia in adults: age-related differences in clinical and bacteriological characteristics, and outcome.

Roubaud Baudron C, Panhard X, Clermont O, Mentré F, Fantin B, Denamur E, Lefort A; COLIBAFI Group..

Epidemiol Infect. 2014 Dec;142(12):2672-83. doi: 10.1017/S0950268814000211. Epub 2014 Feb 20.


Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131.

Johnson JR, Clermont O, Johnston B, Clabots C, Tchesnokova V, Sokurenko E, Junka AF, Maczynska B, Denamur E.

J Clin Microbiol. 2014 May;52(5):1358-65. doi: 10.1128/JCM.03502-13. Epub 2014 Feb 5.


Complexity of Escherichia coli bacteremia pathophysiology evidenced by comparison of isolates from blood and portal of entry within single patients.

Clermont O, Glodt J, Burdet C, Pognard D, Lefort A, Branger C, Denamur E; COLIBAFI Group Members..

Int J Med Microbiol. 2013 Dec;303(8):529-32. doi: 10.1016/j.ijmm.2013.07.002. Epub 2013 Jul 17.


Characterization of fecal extended-spectrum-β-lactamase-producing Escherichia coli in a remote community during a long time period.

Woerther PL, Angebault C, Jacquier H, Clermont O, El Mniai A, Moreau B, Djossou F, Peroz G, Catzeflis F, Denamur E, Andremont A.

Antimicrob Agents Chemother. 2013 Oct;57(10):5060-6. doi: 10.1128/AAC.00848-13. Epub 2013 Aug 5.


Relative fecal abundance of extended-spectrum-β-lactamase-producing Escherichia coli strains and their occurrence in urinary tract infections in women.

Ruppé E, Lixandru B, Cojocaru R, Büke C, Paramythiotou E, Angebault C, Visseaux C, Djuikoue I, Erdem E, Burduniuc O, El Mniai A, Marcel C, Perrier M, Kesteman T, Clermont O, Denamur E, Armand-Lefèvre L, Andremont A.

Antimicrob Agents Chemother. 2013 Sep;57(9):4512-7. doi: 10.1128/AAC.00238-13. Epub 2013 Jul 8.


Real-time PCR for quantitative analysis of human commensal Escherichia coli populations reveals a high frequency of subdominant phylogroups.

Smati M, Clermont O, Le Gal F, Schichmanoff O, Jauréguy F, Eddi A, Denamur E, Picard B; Coliville Group..

Appl Environ Microbiol. 2013 Aug;79(16):5005-12. doi: 10.1128/AEM.01423-13. Epub 2013 Jun 14.

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