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Items: 1 to 20 of 39

1.

Functional genomic analysis and neuroanatomical localization of miR-2954, a song-responsive sex-linked microRNA in the zebra finch.

Lin YC, Balakrishnan CN, Clayton DF.

Front Neurosci. 2014 Dec 16;8:409. doi: 10.3389/fnins.2014.00409. eCollection 2014.

2.

The opportunities and challenges of large-scale molecular approaches to songbird neurobiology.

Mello CV, Clayton DF.

Neurosci Biobehav Rev. 2015 Mar;50:70-6. doi: 10.1016/j.neubiorev.2014.09.017. Epub 2014 Oct 2. Review.

3.

Brain transcriptome sequencing and assembly of three songbird model systems for the study of social behavior.

Balakrishnan CN, Mukai M, Gonser RA, Wingfield JC, London SE, Tuttle EM, Clayton DF.

PeerJ. 2014 May 22;2:e396. doi: 10.7717/peerj.396. eCollection 2014.

4.

Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome.

Balakrishnan CN, Chapus C, Brewer MS, Clayton DF.

Open Biol. 2013 Sep 4;3(9):130063. doi: 10.1098/rsob.130063.

5.

Noninvasive diffusive optical imaging of the auditory response to birdsong in the zebra finch.

Lee JV, Maclin EL, Low KA, Gratton G, Fabiani M, Clayton DF.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2013 Mar;199(3):227-38. doi: 10.1007/s00359-012-0788-0. Epub 2013 Jan 16.

6.

High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior.

Stevenson TJ, Replogle K, Drnevich J, Clayton DF, Ball GF.

BMC Neurosci. 2012 Oct 19;13:126. doi: 10.1186/1471-2202-13-126.

7.

Impact of experience-dependent and -independent factors on gene expression in songbird brain.

Drnevich J, Replogle KL, Lovell P, Hahn TP, Johnson F, Mast TG, Nordeen E, Nordeen K, Strand C, London SE, Mukai M, Wingfield JC, Arnold AP, Ball GF, Brenowitz EA, Wade J, Mello CV, Clayton DF.

Proc Natl Acad Sci U S A. 2012 Oct 16;109 Suppl 2:17245-52. doi: 10.1073/pnas.1200655109. Epub 2012 Oct 8.

8.

RNA-seq transcriptome analysis of male and female zebra finch cell lines.

Balakrishnan CN, Lin YC, London SE, Clayton DF.

Genomics. 2012 Dec;100(6):363-9. doi: 10.1016/j.ygeno.2012.08.002. Epub 2012 Aug 21.

9.

Seasonal changes in patterns of gene expression in avian song control brain regions.

Thompson CK, Meitzen J, Replogle K, Drnevich J, Lent KL, Wissman AM, Farin FM, Bammler TK, Beyer RP, Clayton DF, Perkel DJ, Brenowitz EA.

PLoS One. 2012;7(4):e35119. doi: 10.1371/journal.pone.0035119. Epub 2012 Apr 18.

10.

Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain.

Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF.

BMC Genomics. 2011 May 31;12(1):277. doi: 10.1186/1471-2164-12-277.

11.

Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry.

Amaya KR, Sweedler JV, Clayton DF.

J Neurochem. 2011 Aug;118(4):499-511. doi: 10.1111/j.1471-4159.2011.07274.x. Epub 2011 May 19.

12.

Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor.

Janes DE, Chapus C, Gondo Y, Clayton DF, Sinha S, Blatti CA, Organ CL, Fujita MK, Balakrishnan CN, Edwards SV.

Genome Biol Evol. 2011;3:102-13. doi: 10.1093/gbe/evq087. Epub 2010 Dec 23.

13.

Molecular evolution of genes in avian genomes.

Nam K, Mugal C, Nabholz B, Schielzeth H, Wolf JB, Backström N, Künstner A, Balakrishnan CN, Heger A, Ponting CP, Clayton DF, Ellegren H.

Genome Biol. 2010;11(6):R68. doi: 10.1186/gb-2010-11-6-r68. Epub 2010 Jun 23.

14.

The genome of a songbird.

Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin YC, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backström N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Völker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AF, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang SP, Li X, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, Mardis ER, Wilson RK.

Nature. 2010 Apr 1;464(7289):757-62. doi: 10.1038/nature08819.

15.

The zebra finch neuropeptidome: prediction, detection and expression.

Xie F, London SE, Southey BR, Annangudi SP, Amare A, Rodriguez-Zas SL, Clayton DF, Sweedler JV.

BMC Biol. 2010 Apr 1;8:28. doi: 10.1186/1741-7007-8-28.

16.

Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch.

London SE, Clayton DF.

BMC Neurosci. 2010 Apr 1;11:46. doi: 10.1186/1471-2202-11-46.

17.

Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds.

Itoh Y, Replogle K, Kim YH, Wade J, Clayton DF, Arnold AP.

Genome Res. 2010 Apr;20(4):512-8. doi: 10.1101/gr.102343.109. Epub 2010 Mar 31.

18.

Seasonal differences of gene expression profiles in song sparrow (Melospiza melodia) hypothalamus in relation to territorial aggression.

Mukai M, Replogle K, Drnevich J, Wang G, Wacker D, Band M, Clayton DF, Wingfield JC.

PLoS One. 2009 Dec 4;4(12):e8182. doi: 10.1371/journal.pone.0008182.

19.

Integrating genomes, brain and behavior in the study of songbirds.

Clayton DF, Balakrishnan CN, London SE.

Curr Biol. 2009 Sep 29;19(18):R865-73. doi: 10.1016/j.cub.2009.07.006. Review.

20.

Discrete molecular states in the brain accompany changing responses to a vocal signal.

Dong S, Replogle KL, Hasadsri L, Imai BS, Yau PM, Rodriguez-Zas S, Southey BR, Sweedler JV, Clayton DF.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11364-9. doi: 10.1073/pnas.0812998106. Epub 2009 Jun 18.

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