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Items: 18

1.

Prioritisation of structural variant calls in cancer genomes.

Ahdesmäki MJ, Chapman BA, Cingolani P, Hofmann O, Sidoruk A, Lai Z, Zakharov G, Rodichenko M, Alperovich M, Jenkins D, Carr TH, Stetson D, Dougherty B, Barrett JC, Johnson JH.

PeerJ. 2017 Apr 4;5:e3166. doi: 10.7717/peerj.3166. eCollection 2017.

2.

Community-driven development for computational biology at Sprints, Hackathons and Codefests.

Möller S, Afgan E, Banck M, Bonnal RJ, Booth T, Chilton J, Cock PJ, Gumbel M, Harris N, Holland R, Kalaš M, Kaján L, Kibukawa E, Powel DR, Prins P, Quinn J, Sallou O, Strozzi F, Seemann T, Sloggett C, Soiland-Reyes S, Spooner W, Steinbiss S, Tille A, Travis AJ, Guimera R, Katayama T, Chapman BA.

BMC Bioinformatics. 2014;15 Suppl 14:S7. doi: 10.1186/1471-2105-15-S14-S7. Epub 2014 Nov 27.

3.

The Bioinformatics Open Source Conference (BOSC) 2013.

Harris NL, Cock PJ, Chapman BA, Goecks J, Hotz HR, Lapp H.

Bioinformatics. 2015 Jan 15;31(2):299-300. doi: 10.1093/bioinformatics/btu413. Epub 2014 Jul 14. No abstract available.

4.

GEMINI: integrative exploration of genetic variation and genome annotations.

Paila U, Chapman BA, Kirchner R, Quinlan AR.

PLoS Comput Biol. 2013;9(7):e1003153. doi: 10.1371/journal.pcbi.1003153. Epub 2013 Jul 18.

5.

Targeted exome sequencing of suspected mitochondrial disorders.

Lieber DS, Calvo SE, Shanahan K, Slate NG, Liu S, Hershman SG, Gold NB, Chapman BA, Thorburn DR, Berry GT, Schmahmann JD, Borowsky ML, Mueller DM, Sims KB, Mootha VK.

Neurology. 2013 May 7;80(19):1762-70. doi: 10.1212/WNL.0b013e3182918c40. Epub 2013 Apr 17.

6.

Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython.

Talevich E, Invergo BM, Cock PJ, Chapman BA.

BMC Bioinformatics. 2012 Aug 21;13:209. doi: 10.1186/1471-2105-13-209.

7.

Histone H3R2 symmetric dimethylation and histone H3K4 trimethylation are tightly correlated in eukaryotic genomes.

Yuan CC, Matthews AG, Jin Y, Chen CF, Chapman BA, Ohsumi TK, Glass KC, Kutateladze TG, Borowsky ML, Struhl K, Oettinger MA.

Cell Rep. 2012 Feb 23;1(2):83-90.

8.

The genomic binding sites of a noncoding RNA.

Simon MD, Wang CI, Kharchenko PV, West JA, Chapman BA, Alekseyenko AA, Borowsky ML, Kuroda MI, Kingston RE.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20497-502. doi: 10.1073/pnas.1113536108. Epub 2011 Dec 5.

9.

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge.

Grau DJ, Chapman BA, Garlick JD, Borowsky M, Francis NJ, Kingston RE.

Genes Dev. 2011 Oct 15;25(20):2210-21. doi: 10.1101/gad.17288211.

10.

Pairwise selection assembly for sequence-independent construction of long-length DNA.

Blake WJ, Chapman BA, Zindal A, Lee ME, Lippow SM, Baynes BM.

Nucleic Acids Res. 2010 May;38(8):2594-602. doi: 10.1093/nar/gkq123. Epub 2010 Mar 1.

11.

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.

Bioinformatics. 2009 Jun 1;25(11):1422-3. doi: 10.1093/bioinformatics/btp163. Epub 2009 Mar 20.

12.

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.

Chapman BA, Bowers JE, Feltus FA, Paterson AH.

Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2730-5. Epub 2006 Feb 8.

13.

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

Paterson AH, Bowers JE, Chapman BA.

Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9903-8. Epub 2004 May 25.

14.
15.

The significance of haemochromatosis gene mutations in the general population: implications for screening.

Burt MJ, George PM, Upton JD, Collett JA, Frampton CM, Chapman TM, Walmsley TA, Chapman BA.

Gut. 1998 Dec;43(6):830-6.

16.

Comparison of histological and biochemical hepatic iron indexes in the diagnosis of genetic haemochromatosis.

George PM, Conaghan C, Angus HB, Walmsley TA, Chapman BA.

J Clin Pathol. 1996 Feb;49(2):159-63.

17.

Primary biliary cirrhosis presenting with granulomatous skin lesions.

Jardine DL, Chambers ST, Hart DJ, Chapman BA.

Gut. 1994 Apr;35(4):564-6.

18.

The influence of sex upon the antibody response to an incompatible tumour.

Batchelor JR, Chapman BA.

Immunology. 1965 Dec;9(6):553-64. No abstract available.

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