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Items: 8

1.

Designing an intuitive web application for drug discovery scientists.

Karamanis N, Pignatelli M, Carvalho-Silva D, Rowland F, Cham JA, Dunham I.

Drug Discov Today. 2018 Jan 11. pii: S1359-6446(17)30423-3. doi: 10.1016/j.drudis.2018.01.032. [Epub ahead of print]

2.

Open Targets: a platform for therapeutic target identification and validation.

Koscielny G, An P, Carvalho-Silva D, Cham JA, Fumis L, Gasparyan R, Hasan S, Karamanis N, Maguire M, Papa E, Pierleoni A, Pignatelli M, Platt T, Rowland F, Wankar P, Bento AP, Burdett T, Fabregat A, Forbes S, Gaulton A, Gonzalez CY, Hermjakob H, Hersey A, Jupe S, Kafkas Ş, Keays M, Leroy C, Lopez FJ, Magarinos MP, Malone J, McEntyre J, Munoz-Pomer Fuentes A, O'Donovan C, Papatheodorou I, Parkinson H, Palka B, Paschall J, Petryszak R, Pratanwanich N, Sarntivijal S, Saunders G, Sidiropoulos K, Smith T, Sondka Z, Stegle O, Tang YA, Turner E, Vaughan B, Vrousgou O, Watkins X, Martin MJ, Sanseau P, Vamathevan J, Birney E, Barrett J, Dunham I.

Nucleic Acids Res. 2017 Jan 4;45(D1):D985-D994. doi: 10.1093/nar/gkw1055. Epub 2016 Nov 29.

3.

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.

Squizzato S, Park YM, Buso N, Gur T, Cowley A, Li W, Uludag M, Pundir S, Cham JA, McWilliam H, Lopez R.

Nucleic Acids Res. 2015 Jul 1;43(W1):W585-8. doi: 10.1093/nar/gkv316. Epub 2015 Apr 8.

4.

Ten simple rules for running interactive workshops.

Pavelin K, Pundir S, Cham JA.

PLoS Comput Biol. 2014 Feb 27;10(2):e1003485. doi: 10.1371/journal.pcbi.1003485. eCollection 2014 Feb. No abstract available.

5.

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.

de Matos P, Cham JA, Cao H, Alcántara R, Rowland F, Lopez R, Steinbeck C.

BMC Bioinformatics. 2013 Mar 20;14:103. doi: 10.1186/1471-2105-14-103.

6.

The EBI enzyme portal.

Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D773-80. doi: 10.1093/nar/gks1112. Epub 2012 Nov 21.

7.

Bioinformatics meets user-centred design: a perspective.

Pavelin K, Cham JA, de Matos P, Brooksbank C, Cameron G, Steinbeck C.

PLoS Comput Biol. 2012;8(7):e1002554. doi: 10.1371/journal.pcbi.1002554. Epub 2012 Jul 12.

8.

MRMaid-DB: a repository of published SRM transitions.

Cham JA, Bianco L, Barton C, Bessant C.

J Proteome Res. 2010 Jan;9(1):620-5. doi: 10.1021/pr900713u.

PMID:
19908920

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