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PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens.

Zankari E, Allesøe R, Joensen KG, Cavaco LM, Lund O, Aarestrup FM.

J Antimicrob Chemother. 2017 Oct 1;72(10):2764-2768. doi: 10.1093/jac/dkx217.


Genome and Plasmid Sequences of Escherichia coli KV7, an Extended-Spectrum β-Lactamase Isolate Derived from Feces of a Healthy Pig.

Bateman MD, de Vries SPW, Gupta S, Guardabassi L, Cavaco LM, Grant AJ, Holmes MA.

Genome Announc. 2017 Sep 21;5(38). pii: e00595-17. doi: 10.1128/genomeA.00595-17.


First detection of linezolid resistance due to the optrA gene in enterococci isolated from food products in Denmark.

Cavaco LM, Korsgaard H, Kaas RS, Seyfarth AM, Leekitcharoenphon P, Hendriksen RS.

J Glob Antimicrob Resist. 2017 Jun;9:128-129. doi: 10.1016/j.jgar.2017.04.001. Epub 2017 May 20. No abstract available.


Detection of linezolid resistance due to the optrA gene in Enterococcus faecalis from poultry meat from the American continent (Colombia).

Cavaco LM, Bernal JF, Zankari E, Léon M, Hendriksen RS, Perez-Gutierrez E, Aarestrup FM, Donado-Godoy P.

J Antimicrob Chemother. 2017 Mar 1;72(3):678-683. doi: 10.1093/jac/dkw490.


Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015.

Hasman H, Hammerum AM, Hansen F, Hendriksen RS, Olesen B, Agersø Y, Zankari E, Leekitcharoenphon P, Stegger M, Kaas RS, Cavaco LM, Hansen DS, Aarestrup FM, Skov RL.

Euro Surveill. 2015;20(49). doi: 10.2807/1560-7917.ES.2015.20.49.30085. Erratum in: Euro Surveill. 2015;20(50). doi: 10.2807/1560-7917.ES.2015.20.50.30091.


Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012.

Hendriksen RS, Leekitcharoenphon P, Lukjancenko O, Lukwesa-Musyani C, Tambatamba B, Mwaba J, Kalonda A, Nakazwe R, Kwenda G, Jensen JD, Svendsen CA, Dittmann KK, Kaas RS, Cavaco LM, Aarestrup FM, Hasman H, Mwansa JC.

J Clin Microbiol. 2015 Jan;53(1):262-72. doi: 10.1128/JCM.02026-14. Epub 2014 Nov 12.


Comparison of air samples, nasal swabs, ear-skin swabs and environmental dust samples for detection of methicillin-resistant Staphylococcus aureus (MRSA) in pig herds.

Agersø Y, Vigre H, Cavaco LM, Josefsen MH.

Epidemiol Infect. 2014 Aug;142(8):1727-36. doi: 10.1017/S095026881300280X. Epub 2013 Nov 13.


A brief multi-disciplinary review on antimicrobial resistance in medicine and its linkage to the global environmental microbiota.

Cantas L, Shah SQ, Cavaco LM, Manaia CM, Walsh F, Popowska M, Garelick H, Bürgmann H, Sørum H.

Front Microbiol. 2013 May 14;4:96. doi: 10.3389/fmicb.2013.00096. eCollection 2013.


Molecular clonality and antimicrobial resistance in Salmonella enterica serovars Enteritidis and Infantis from broilers in three Northern regions of Iran.

Rahmani M, Peighambari SM, Svendsen CA, Cavaco LM, Agersø Y, Hendriksen RS.

BMC Vet Res. 2013 Apr 5;9:66. doi: 10.1186/1746-6148-9-66.


Antimicrobial resistance and molecular epidemiology of streptococci from bovine mastitis.

Rato MG, Bexiga R, Florindo C, Cavaco LM, Vilela CL, Santos-Sanches I.

Vet Microbiol. 2013 Jan 25;161(3-4):286-94. doi: 10.1016/j.vetmic.2012.07.043. Epub 2012 Aug 3.


SCCmec Type IX Element in Methicillin Resistant Staphylococcusaureusspa Type t337 (CC9) Isolated from Pigs and Pork in Thailand.

Vestergaard M, Cavaco LM, Sirichote P, Unahalekhaka A, Dangsakul W, Svendsen CA, Aarestrup FM, Hendriksen RS.

Front Microbiol. 2012 Mar 22;3:103. doi: 10.3389/fmicb.2012.00103. eCollection 2012.


Study of methicillin resistant Staphylococcus aureus (MRSA) in Danish pigs at slaughter and in imported retail meat reveals a novel MRSA type in slaughter pigs.

Agersø Y, Hasman H, Cavaco LM, Pedersen K, Aarestrup FM.

Vet Microbiol. 2012 May 25;157(1-2):246-50. doi: 10.1016/j.vetmic.2011.12.023. Epub 2011 Dec 24.


Prevalence and characterization of cephalosporin resistance in nonpathogenic Escherichia coli from food-producing animals slaughtered in Poland.

Wasyl D, Hasman H, Cavaco LM, Aarestrup FM.

Microb Drug Resist. 2012 Feb;18(1):79-82. doi: 10.1089/mdr.2011.0033. Epub 2011 Jul 1.


Molecular characterization and antimicrobial susceptibility testing of Escherichia coli isolates from patients with urinary tract infections in 20 Chinese hospitals.

Cao X, Cavaco LM, Lv Y, Li Y, Zheng B, Wang P, Hasman H, Liu Y, Aarestrup FM.

J Clin Microbiol. 2011 Jul;49(7):2496-501. doi: 10.1128/JCM.02503-10. Epub 2011 Apr 27.


Zinc resistance of Staphylococcus aureus of animal origin is strongly associated with methicillin resistance.

Cavaco LM, Hasman H, Aarestrup FM.

Vet Microbiol. 2011 Jun 2;150(3-4):344-8. doi: 10.1016/j.vetmic.2011.02.014. Epub 2011 Feb 23.


International collaborative study on the occurrence of plasmid-mediated quinolone resistance in Salmonella enterica and Escherichia coli isolated from animals, humans, food and the environment in 13 European countries.

Veldman K, Cavaco LM, Mevius D, Battisti A, Franco A, Botteldoorn N, Bruneau M, Perrin-Guyomard A, Cerny T, De Frutos Escobar C, Guerra B, Schroeter A, Gutierrez M, Hopkins K, Myllyniemi AL, Sunde M, Wasyl D, Aarestrup FM.

J Antimicrob Chemother. 2011 Jun;66(6):1278-86. doi: 10.1093/jac/dkr084. Epub 2011 Mar 9.


Cloning and occurrence of czrC, a gene conferring cadmium and zinc resistance in methicillin-resistant Staphylococcus aureus CC398 isolates.

Cavaco LM, Hasman H, Stegger M, Andersen PS, Skov R, Fluit AC, Ito T, Aarestrup FM.

Antimicrob Agents Chemother. 2010 Sep;54(9):3605-8. doi: 10.1128/AAC.00058-10. Epub 2010 Jun 28.


First description of meticillin-resistant Staphylococcus aureus (MRSA) CC30 and CC398 from swine in Portugal.

Pomba C, Hasman H, Cavaco LM, da Fonseca JD, Aarestrup FM.

Int J Antimicrob Agents. 2009 Aug;34(2):193-4. doi: 10.1016/j.ijantimicag.2009.02.019. Epub 2009 Apr 8. No abstract available.


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