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Items: 1 to 20 of 64


Cryptic genetic diversity, population structure, and gene flow in the Mojave rattlesnake (Crotalus scutulatus).

Schield DR, Adams RH, Card DC, Corbin AB, Jezkova T, Hales NR, Meik JM, Perry BW, Spencer CL, Smith LL, Campillo García G, Bouzid NM, Strickland JL, Parkinson CL, Borja M, Castañeda-Gaytán G, Bryson RW Jr, Flores-Villela OA, Mackessy SP, Castoe TA.

Mol Phylogenet Evol. 2018 Jun 11. pii: S1055-7903(17)30499-2. doi: 10.1016/j.ympev.2018.06.013. [Epub ahead of print]


Shifts in Selective Pressures on Snake Phototransduction Genes Associated with Photoreceptor Transmutation and Dim-Light Ancestry.

Schott RK, Van Nynatten A, Card DC, Castoe TA, S W Chang B.

Mol Biol Evol. 2018 Jun 1;35(6):1376-1389. doi: 10.1093/molbev/msy025.


Assessing the impacts of positive selection on coalescent-based species tree estimation and species delimitation.

Adams RH, Schield DR, Card DC, Castoe TA.

Syst Biol. 2018 May 11. doi: 10.1093/sysbio/syy034. [Epub ahead of print]


Plasticity and local adaptation explain lizard cold tolerance.

Card DC, Schield DR, Castoe TA.

Mol Ecol. 2018 May;27(9):2173-2175. doi: 10.1111/mec.14575.


ThetaMater: Bayesian estimation of population size parameter θ from genomic data.

Adams RH, Schield DR, Card DC, Corbin A, Castoe TA.

Bioinformatics. 2018 Mar 15;34(6):1072-1073. doi: 10.1093/bioinformatics/btx733.


The Discovery of XY Sex Chromosomes in a Boa and Python.

Gamble T, Castoe TA, Nielsen SV, Banks JL, Card DC, Schield DR, Schuett GW, Booth W.

Curr Biol. 2017 Jul 24;27(14):2148-2153.e4. doi: 10.1016/j.cub.2017.06.010. Epub 2017 Jul 6.


Contrasting gene expression programs correspond with predator-induced phenotypic plasticity within and across generations in Daphnia.

Hales NR, Schield DR, Andrew AL, Card DC, Walsh MR, Castoe TA.

Mol Ecol. 2017 Oct;26(19):5003-5015. doi: 10.1111/mec.14213. Epub 2017 Jul 10.


Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes.

Schield DR, Adams RH, Card DC, Perry BW, Pasquesi GM, Jezkova T, Portik DM, Andrew AL, Spencer CL, Sanchez EE, Fujita MK, Mackessy SP, Castoe TA.

Ecol Evol. 2017 Apr 23;7(11):3951-3966. doi: 10.1002/ece3.2996. eCollection 2017 Jun.


Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python.

Andrew AL, Perry BW, Card DC, Schield DR, Ruggiero RP, McGaugh SE, Choudhary A, Secor SM, Castoe TA.

BMC Genomics. 2017 May 2;18(1):338. doi: 10.1186/s12864-017-3743-1.


GppFst: genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data.

Adams RH, Schield DR, Card DC, Blackmon H, Castoe TA.

Bioinformatics. 2017 May 1;33(9):1414-1415. doi: 10.1093/bioinformatics/btw795.


Hormonally Mediated Increases in Sex-Biased Gene Expression Accompany the Breakdown of Between-Sex Genetic Correlations in a Sexually Dimorphic Lizard.

Cox RM, Cox CL, McGlothlin JW, Card DC, Andrew AL, Castoe TA.

Am Nat. 2017 Mar;189(3):315-332. doi: 10.1086/690105. Epub 2017 Jan 25.


Targeted Capture of Complete Coding Regions across Divergent Species.

Schott RK, Panesar B, Card DC, Preston M, Castoe TA, Chang BS.

Genome Biol Evol. 2017 Feb 1;9(2):398-414. doi: 10.1093/gbe/evx005.


Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia.

Shortt JA, Card DC, Schield DR, Liu Y, Zhong B, Castoe TA, Carlton EJ, Pollock DD.

PLoS Negl Trop Dis. 2017 Jan 20;11(1):e0005292. doi: 10.1371/journal.pntd.0005292. eCollection 2017 Jan.


A cryptic palm-pitviper species (Squamata: Viperidae: Bothriechis) from the Costa Rican highlands, with notes on the variation within B. nigroviridis.

Doan TM, Mason AJ, Castoe TA, Sasa M, Parkinson CL.

Zootaxa. 2016 Jul 15;4138(2):271-90. doi: 10.11646/zootaxa.4138.2.3.


Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance.

McGlothlin JW, Kobiela ME, Feldman CR, Castoe TA, Geffeney SL, Hanifin CT, Toledo G, Vonk FJ, Richardson MK, Brodie ED Jr, Pfrender ME, Brodie ED 3rd.

Curr Biol. 2016 Jun 20;26(12):1616-1621. doi: 10.1016/j.cub.2016.04.056. Epub 2016 Jun 9.


Genetic surfing, not allopatric divergence, explains spatial sorting of mitochondrial haplotypes in venomous coralsnakes.

Streicher JW, McEntee JP, Drzich LC, Card DC, Schield DR, Smart U, Parkinson CL, Jezkova T, Smith EN, Castoe TA.

Evolution. 2016 Jul;70(7):1435-49. doi: 10.1111/evo.12967. Epub 2016 Jun 17.


Phylogeographic and population genetic analyses reveal multiple species of Boa and independent origins of insular dwarfism.

Card DC, Schield DR, Adams RH, Corbin AB, Perry BW, Andrew AL, Pasquesi GI, Smith EN, Jezkova T, Boback SM, Booth W, Castoe TA.

Mol Phylogenet Evol. 2016 Sep;102:104-16. doi: 10.1016/j.ympev.2016.05.034. Epub 2016 May 27.


Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution.

Adams RH, Blackmon H, Reyes-Velasco J, Schield DR, Card DC, Andrew AL, Waynewood N, Castoe TA.

Genome. 2016 May;59(5):295-310. doi: 10.1139/gen-2015-0124. Epub 2016 Mar 1.


Contrasting Patterns of Evolutionary Diversification in the Olfactory Repertoires of Reptile and Bird Genomes.

Vandewege MW, Mangum SF, Gabaldón T, Castoe TA, Ray DA, Hoffmann FG.

Genome Biol Evol. 2016 Feb 9;8(3):470-80. doi: 10.1093/gbe/evw013.


Correction: Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake.

Castoe TA, Poole AW, de Koning AP, Jones KL, Tomback DF, Oyler-McCance SJ, Fike JA, Lance SL, Streicher JW, Smith EN, Pollock DD.

PLoS One. 2015 Aug 20;10(8):e0136465. doi: 10.1371/journal.pone.0136465. eCollection 2015. No abstract available.

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