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Items: 1 to 20 of 25


RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification.

Van Riper SK, Higgins L, Carlis JV, Griffin TJ.

Bioinformatics. 2016 Jul 1;32(13):2035-7. doi: 10.1093/bioinformatics/btw091. Epub 2016 Feb 18.


Mucosal Humoral Immune Response to SIVmac239∆nef Vaccination and Vaginal Challenge.

Zeng M, Smith AJ, Shang L, Wietgrefe SW, Voss JE, Carlis JV, Li Q, Piatak M Jr, Lifson JD, Johnson RP, Haase AT.

J Immunol. 2016 Mar 15;196(6):2809-18. doi: 10.4049/jimmunol.1500156. Epub 2016 Feb 10.


Live simian immunodeficiency virus vaccine correlate of protection: immune complex-inhibitory Fc receptor interactions that reduce target cell availability.

Smith AJ, Wietgrefe SW, Shang L, Reilly CS, Southern PJ, Perkey KE, Duan L, Kohler H, Müller S, Robinson J, Carlis JV, Li Q, Johnson RP, Haase AT.

J Immunol. 2014 Sep 15;193(6):3126-33. doi: 10.4049/jimmunol.1400822. Epub 2014 Aug 20.


Live simian immunodeficiency virus vaccine correlate of protection: local antibody production and concentration on the path of virus entry.

Li Q, Zeng M, Duan L, Voss JE, Smith AJ, Pambuccian S, Shang L, Wietgrefe S, Southern PJ, Reilly CS, Skinner PJ, Zupancic ML, Carlis JV, Piatak M Jr, Waterman D, Reeves RK, Masek-Hammerman K, Derdeyn CA, Alpert MD, Evans DT, Kohler H, Müller S, Robinson J, Lifson JD, Burton DR, Johnson RP, Haase AT.

J Immunol. 2014 Sep 15;193(6):3113-25. doi: 10.4049/jimmunol.1400820. Epub 2014 Aug 18.


Improved intensity-based label-free quantification via proximity-based intensity normalization (PIN).

Van Riper SK, de Jong EP, Higgins L, Carlis JV, Griffin TJ.

J Proteome Res. 2014 Mar 7;13(3):1281-92. doi: 10.1021/pr400866r. Epub 2014 Feb 26.


Mass spectrometry-based proteomics: basic principles and emerging technologies and directions.

Van Riper SK, de Jong EP, Carlis JV, Griffin TJ.

Adv Exp Med Biol. 2013;990:1-35. doi: 10.1007/978-94-007-5896-4_1. Review.


Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery.

de Jong EP, van Riper SK, Koopmeiners JS, Carlis JV, Griffin TJ.

Clin Chim Acta. 2011 Nov 20;412(23-24):2284-8. doi: 10.1016/j.cca.2011.08.023. Epub 2011 Aug 24.


Cumulative mechanisms of lymphoid tissue fibrosis and T cell depletion in HIV-1 and SIV infections.

Zeng M, Smith AJ, Wietgrefe SW, Southern PJ, Schacker TW, Reilly CS, Estes JD, Burton GF, Silvestri G, Lifson JD, Carlis JV, Haase AT.

J Clin Invest. 2011 Mar;121(3):998-1008. doi: 10.1172/JCI45157.


Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva.

Bandhakavi S, Van Riper SK, Tawfik PN, Stone MD, Haddad T, Rhodus NL, Carlis JV, Griffin TJ.

J Proteome Res. 2011 Mar 4;10(3):1052-61. doi: 10.1021/pr100857t. Epub 2011 Jan 14.


LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments.

Onsongo G, Stone MD, Van Riper SK, Chilton J, Wu B, Higgins L, Lund TC, Carlis JV, Griffin TJ.

Proteomics. 2010 Oct;10(19):3533-8. doi: 10.1002/pmic.201000189.


Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions.

de Jong EP, Xie H, Onsongo G, Stone MD, Chen XB, Kooren JA, Refsland EW, Griffin RJ, Ondrey FG, Wu B, Le CT, Rhodus NL, Carlis JV, Griffin TJ.

PLoS One. 2010 Jun 17;5(6):e11148. doi: 10.1371/journal.pone.0011148.


Fluorodeoxyglucose positron emission tomography of mild cognitive impairment with clinical follow-up at 3 years.

Pardo JV, Lee JT, Kuskowski MA, Munch KR, Carlis JV, Sheikh SA, Surerus C, Lewis SM, McCarten JR, Fink H, McPherson S, Shah HH, Rottunda S, Dysken MW.

Alzheimers Dement. 2010 Jul;6(4):326-33. doi: 10.1016/j.jalz.2009.09.005. Epub 2010 May 6.


Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys.

Bosinger SE, Li Q, Gordon SN, Klatt NR, Duan L, Xu L, Francella N, Sidahmed A, Smith AJ, Cramer EM, Zeng M, Masopust D, Carlis JV, Ran L, Vanderford TH, Paiardini M, Isett RB, Baldwin DA, Else JG, Staprans SI, Silvestri G, Haase AT, Kelvin DJ.

J Clin Invest. 2009 Dec;119(12):3556-72. doi: 10.1172/JCI40115.


Microarray analysis of lymphatic tissue reveals stage-specific, gene expression signatures in HIV-1 infection.

Li Q, Smith AJ, Schacker TW, Carlis JV, Duan L, Reilly CS, Haase AT.

J Immunol. 2009 Aug 1;183(3):1975-82. doi: 10.4049/jimmunol.0803222. Epub 2009 Jul 13.


Visualizing antigen-specific and infected cells in situ predicts outcomes in early viral infection.

Li Q, Skinner PJ, Ha SJ, Duan L, Mattila TL, Hage A, White C, Barber DL, O'Mara L, Southern PJ, Reilly CS, Carlis JV, Miller CJ, Ahmed R, Haase AT.

Science. 2009 Mar 27;323(5922):1726-9. doi: 10.1126/science.1168676.


Glycerol monolaurate prevents mucosal SIV transmission.

Li Q, Estes JD, Schlievert PM, Duan L, Brosnahan AJ, Southern PJ, Reilly CS, Peterson ML, Schultz-Darken N, Brunner KG, Nephew KR, Pambuccian S, Lifson JD, Carlis JV, Haase AT.

Nature. 2009 Apr 23;458(7241):1034-8. doi: 10.1038/nature07831. Epub 2009 Mar 4.


Internet image viewer (iiV).

Lee JT, Munch KR, Carlis JV, Pardo JV.

BMC Med Imaging. 2008 May 29;8:10. doi: 10.1186/1471-2342-8-10.


Simian immunodeficiency virus-induced intestinal cell apoptosis is the underlying mechanism of the regenerative enteropathy of early infection.

Li Q, Estes JD, Duan L, Jessurun J, Pambuccian S, Forster C, Wietgrefe S, Zupancic M, Schacker T, Reilly C, Carlis JV, Haase AT.

J Infect Dis. 2008 Feb 1;197(3):420-9. doi: 10.1086/525046.


Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry.

Xie H, Onsongo G, Popko J, de Jong EP, Cao J, Carlis JV, Griffin RJ, Rhodus NL, Griffin TJ.

Mol Cell Proteomics. 2008 Mar;7(3):486-98. Epub 2007 Nov 28.


Bringing functional brain image analysis to the clinician: initial assessment of an online interactive diagnostic aide.

Munch KR, Carlis JV, Pardo JV, Lee JT.

Comput Biol Med. 2008 Feb;38(2):155-64. Epub 2007 Nov 19.

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