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Items: 1 to 20 of 58

1.

Integration of VDR genome wide binding and GWAS genetic variation data reveals co-occurrence of VDR and NF-κB binding that is linked to immune phenotypes.

Singh PK, van den Berg PR, Long MD, Vreugdenhil A, Grieshober L, Ochs-Balcom HM, Wang J, Delcambre S, Heikkinen S, Carlberg C, Campbell MJ, Sucheston-Campbell LE.

BMC Genomics. 2017 Feb 6;18(1):132. doi: 10.1186/s12864-017-3481-4.

2.

Effects of a healthy Nordic diet on gene expression changes in peripheral blood mononuclear cells in response to an oral glucose tolerance test in subjects with metabolic syndrome: a SYSDIET sub-study.

Leder L, Kolehmainen M, Narverud I, Dahlman I, Myhrstad MC, de Mello VD, Paananen J, Carlberg C, Schwab U, Herzig KH, Cloetens L, Storm MU, Hukkanen J, Savolainen MJ, Rosqvist F, Hermansen K, Dragsted LO, Gunnarsdottir I, Thorsdottir I, Risérus U, Åkesson B, Thoresen M, Arner P, Poutanen KS, Uusitupa M, Holven KB, Ulven SM.

Genes Nutr. 2016 Mar 17;11:3. doi: 10.1186/s12263-016-0521-4. eCollection 2016.

3.

Vitamin D receptor signaling improves Hutchinson-Gilford progeria syndrome cellular phenotypes.

Kreienkamp R, Croke M, Neumann MA, Bedia-Diaz G, Graziano S, Dusso A, Dorsett D, Carlberg C, Gonzalo S.

Oncotarget. 2016 May 24;7(21):30018-31. doi: 10.18632/oncotarget.9065.

4.

Epigenome-wide effects of vitamin D and their impact on the transcriptome of human monocytes involve CTCF.

Seuter S, Neme A, Carlberg C.

Nucleic Acids Res. 2016 May 19;44(9):4090-104. doi: 10.1093/nar/gkv1519. Epub 2015 Dec 28.

5.

Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism.

Rybakova KN, Bruggeman FJ, Tomaszewska A, Moné MJ, Carlberg C, Westerhoff HV.

PLoS Comput Biol. 2015 Apr 24;11(4):e1004236. doi: 10.1371/journal.pcbi.1004236. eCollection 2015 Apr.

6.

Relevance of vitamin D receptor target genes for monitoring the vitamin D responsiveness of primary human cells.

Vukić M, Neme A, Seuter S, Saksa N, de Mello VD, Nurmi T, Uusitupa M, Tuomainen TP, Virtanen JK, Carlberg C.

PLoS One. 2015 Apr 13;10(4):e0124339. doi: 10.1371/journal.pone.0124339. eCollection 2015.

7.

Tracing the molecular basis of transcriptional dynamics in noisy data by using an experiment-based mathematical model.

Rybakova KN, Tomaszewska A, van Mourik S, Blom J, Westerhoff HV, Carlberg C, Bruggeman FJ.

Nucleic Acids Res. 2015 Jan;43(1):153-61. doi: 10.1093/nar/gku1272. Epub 2014 Dec 3.

8.

The physiology of vitamin D-far more than calcium and bone.

Carlberg C.

Front Physiol. 2014 Sep 2;5:335. doi: 10.3389/fphys.2014.00335. eCollection 2014. No abstract available.

9.

Genome-wide (over)view on the actions of vitamin D.

Carlberg C.

Front Physiol. 2014 Apr 29;5:167. doi: 10.3389/fphys.2014.00167. eCollection 2014. Review.

10.

Patterns of genome-wide VDR locations.

Tuoresmäki P, Väisänen S, Neme A, Heikkinen S, Carlberg C.

PLoS One. 2014 Apr 30;9(4):e96105. doi: 10.1371/journal.pone.0096105. eCollection 2014.

11.

Characterization of genomic vitamin D receptor binding sites through chromatin looping and opening.

Seuter S, Neme A, Carlberg C.

PLoS One. 2014 Apr 24;9(4):e96184. doi: 10.1371/journal.pone.0096184. eCollection 2014.

12.

Primary 1,25-dihydroxyvitamin D3 response of the interleukin 8 gene cluster in human monocyte- and macrophage-like cells.

Ryynänen J, Carlberg C.

PLoS One. 2013 Oct 21;8(10):e78170. doi: 10.1371/journal.pone.0078170. eCollection 2013.

13.

Gene regulatory scenarios of primary 1,25-dihydroxyvitamin d3 target genes in a human myeloid leukemia cell line.

Ryynänen J, Seuter S, Campbell MJ, Carlberg C.

Cancers (Basel). 2013 Oct 16;5(4):1221-41. doi: 10.3390/cancers5041221.

14.

Primary vitamin D target genes allow a categorization of possible benefits of vitamin D₃ supplementation.

Carlberg C, Seuter S, de Mello VD, Schwab U, Voutilainen S, Pulkki K, Nurmi T, Virtanen J, Tuomainen TP, Uusitupa M.

PLoS One. 2013 Jul 29;8(7):e71042. doi: 10.1371/journal.pone.0071042. Print 2013.

15.

Vitamin D receptor signaling mechanisms: integrated actions of a well-defined transcription factor.

Carlberg C, Campbell MJ.

Steroids. 2013 Feb;78(2):127-36. doi: 10.1016/j.steroids.2012.10.019. Epub 2012 Nov 23. Review.

16.
17.

Dataset integration identifies transcriptional regulation of microRNA genes by PPARγ in differentiating mouse 3T3-L1 adipocytes.

John E, Wienecke-Baldacchino A, Liivrand M, Heinäniemi M, Carlberg C, Sinkkonen L.

Nucleic Acids Res. 2012 May;40(10):4446-60. doi: 10.1093/nar/gks025. Epub 2012 Feb 7.

18.

Genome-wide landscape of liver X receptor chromatin binding and gene regulation in human macrophages.

Pehkonen P, Welter-Stahl L, Diwo J, Ryynänen J, Wienecke-Baldacchino A, Heikkinen S, Treuter E, Steffensen KR, Carlberg C.

BMC Genomics. 2012 Jan 31;13:50. doi: 10.1186/1471-2164-13-50.

19.

Dynamic nature of transcriptional regulation of nuclear receptor target genes in the context of chromatin organization.

Väisänen S, Matilainen J, Carlberg C.

Dermatoendocrinol. 2011 Jul;3(3):125-9. doi: 10.4161/derm.3.3.15803. Epub 2011 Jul 1.

20.

1,25-dihydroxyvitamin D3 influences cellular homocysteine levels in murine preosteoblastic MC3T3-E1 cells by direct regulation of cystathionine β-synthase.

Kriebitzsch C, Verlinden L, Eelen G, van Schoor NM, Swart K, Lips P, Meyer MB, Pike JW, Boonen S, Carlberg C, Vitvitsky V, Bouillon R, Banerjee R, Verstuyf A.

J Bone Miner Res. 2011 Dec;26(12):2991-3000. doi: 10.1002/jbmr.493.

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