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VarI-SIG 2015: methods for personalized medicine - the role of variant interpretation in research and diagnostics.

Bromberg Y, Capriotti E, Carter H.

BMC Genomics. 2016 Jun 23;17 Suppl 2:425. doi: 10.1186/s12864-016-2721-3. No abstract available.


Computational methods and resources for the interpretation of genomic variants in cancer.

Tian R, Basu MK, Capriotti E.

BMC Genomics. 2015;16 Suppl 8:S7. doi: 10.1186/1471-2164-16-S8-S7. Epub 2015 Jun 18. Review.


VarI-SIG 2014--From SNPs to variants: interpreting different types of genetic variants.

Bromberg Y, Capriotti E.

BMC Genomics. 2015;16 Suppl 8:I1. doi: 10.1186/1471-2164-16-S8-I1. Epub 2015 Jun 18. No abstract available.


WALTZ-DB: a benchmark database of amyloidogenic hexapeptides.

Beerten J, Van Durme J, Gallardo R, Capriotti E, Serpell L, Rousseau F, Schymkowitz J.

Bioinformatics. 2015 May 15;31(10):1698-700. doi: 10.1093/bioinformatics/btv027. Epub 2015 Jan 18.


ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples.

Tian R, Basu MK, Capriotti E.

Bioinformatics. 2014 Sep 1;30(17):i572-8. doi: 10.1093/bioinformatics/btu466.


In silico comparative characterization of pharmacogenomic missense variants.

Li B, Seligman C, Thusberg J, Miller JL, Auer J, Whirl-Carrillo M, Capriotti E, Klein TE, Mooney SD.

BMC Genomics. 2014;15 Suppl 4:S4. doi: 10.1186/1471-2164-15-S4-S4. Epub 2014 May 20.


SNP-SIG 2013: from coding to non-coding--new approaches for genomic variant interpretation.

Bromberg Y, Capriotti E.

BMC Genomics. 2014;15 Suppl 4:S1. doi: 10.1186/1471-2164-15-S4-S1. Epub 2014 May 20. No abstract available.


SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.

Di Tommaso P, Bussotti G, Kemena C, Capriotti E, Chatzou M, Prieto P, Notredame C.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W356-60. doi: 10.1093/nar/gku459. Epub 2014 Jun 27.


Computational and theoretical methods for protein folding.

Compiani M, Capriotti E.

Biochemistry. 2013 Dec 3;52(48):8601-24. doi: 10.1021/bi4001529. Epub 2013 Nov 21. Review.


WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures.

Norambuena T, Cares JF, Capriotti E, Melo F.

Bioinformatics. 2013 Oct 15;29(20):2649-50. doi: 10.1093/bioinformatics/btt441. Epub 2013 Aug 7.


Collective judgment predicts disease-associated single nucleotide variants.

Capriotti E, Altman RB, Bromberg Y.

BMC Genomics. 2013;14 Suppl 3:S2. doi: 10.1186/1471-2164-14-S3-S2. Epub 2013 May 28.


Thoughts from SNP-SIG 2012: future challenges in the annotation of genetic variations.

Bromberg Y, Capriotti E.

BMC Genomics. 2013;14 Suppl 3:S1. doi: 10.1186/1471-2164-14-S3-S1. Epub 2013 May 28. No abstract available.


WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.


Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.

Kemena C, Bussotti G, Capriotti E, Marti-Renom MA, Notredame C.

Bioinformatics. 2013 May 1;29(9):1112-9. doi: 10.1093/bioinformatics/btt096. Epub 2013 Feb 28.


SNP-SIG Meeting 2011: identification and annotation of SNPs in the context of structure, function, and disease.

Bromberg Y, Capriotti E.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S1. doi: 10.1186/1471-2164-13-S4-S1. No abstract available.


Bioinformatics and variability in drug response: a protein structural perspective.

Lahti JL, Tang GW, Capriotti E, Liu T, Altman RB.

J R Soc Interface. 2012 Jul 7;9(72):1409-37. doi: 10.1098/rsif.2011.0843. Review.


Bioinformatics for personal genome interpretation.

Capriotti E, Nehrt NL, Kann MG, Bromberg Y.

Brief Bioinform. 2012 Jul;13(4):495-512. Epub 2012 Jan 13. Review.


Improving the prediction of disease-related variants using protein three-dimensional structure.

Capriotti E, Altman RB.

BMC Bioinformatics. 2011;12 Suppl 4:S3. doi: 10.1186/1471-2105-12-S4-S3. Epub 2011 Jul 5.


Phased whole-genome genetic risk in a family quartet using a major allele reference sequence.

Dewey FE, Chen R, Cordero SP, Ormond KE, Caleshu C, Karczewski KJ, Whirl-Carrillo M, Wheeler MT, Dudley JT, Byrnes JK, Cornejo OE, Knowles JW, Woon M, Sangkuhl K, Gong L, Thorn CF, Hebert JM, Capriotti E, David SP, Pavlovic A, West A, Thakuria JV, Ball MP, Zaranek AW, Rehm HL, Church GM, West JS, Bustamante CD, Snyder M, Altman RB, Klein TE, Butte AJ, Ashley EA.

PLoS Genet. 2011 Sep;7(9):e1002280. doi: 10.1371/journal.pgen.1002280. Epub 2011 Sep 15.


A new disease-specific machine learning approach for the prediction of cancer-causing missense variants.

Capriotti E, Altman RB.

Genomics. 2011 Oct;98(4):310-7. doi: 10.1016/j.ygeno.2011.06.010. Epub 2011 Jul 7.

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