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Items: 14

1.

Protein Sequence Annotation Tool (PSAT): a centralized web-based meta-server for high-throughput sequence annotations.

Leung E, Huang A, Cadag E, Montana A, Soliman JL, Zhou CL.

BMC Bioinformatics. 2016 Jan 20;17:43. doi: 10.1186/s12859-016-0887-y.

2.

CD8 T-cell reactivity to islet antigens is unique to type 1 while CD4 T-cell reactivity exists in both type 1 and type 2 diabetes.

Sarikonda G, Pettus J, Phatak S, Sachithanantham S, Miller JF, Wesley JD, Cadag E, Chae J, Ganesan L, Mallios R, Edelman S, Peters B, von Herrath M.

J Autoimmun. 2014 May;50:77-82. doi: 10.1016/j.jaut.2013.12.003. Epub 2013 Dec 30.

PMID:
24387802
3.

Learning virulent proteins from integrated query networks.

Cadag E, Tarczy-Hornoch P, Myler PJ.

BMC Bioinformatics. 2012 Dec 2;13:321. doi: 10.1186/1471-2105-13-321.

4.

Computational analysis of pathogen-borne metallo β-lactamases reveals discriminating structural features between B1 types.

Cadag E, Vitalis E, Lennox KP, Zhou CL, Zemla AT.

BMC Res Notes. 2012 Feb 14;5:96. doi: 10.1186/1756-0500-5-96.

5.

A cascade of classifiers for extracting medication information from discharge summaries.

Halgrim SR, Xia F, Solti I, Cadag E, Uzuner O.

J Biomed Semantics. 2011;2 Suppl 3:S2. doi: 10.1186/2041-1480-2-S3-S2. Epub 2011 Jul 14.

6.

Community annotation experiment for ground truth generation for the i2b2 medication challenge.

Uzuner O, Solti I, Xia F, Cadag E.

J Am Med Inform Assoc. 2010 Sep-Oct;17(5):519-23. doi: 10.1136/jamia.2010.004200.

7.

Extracting medication information from clinical text.

Uzuner O, Solti I, Cadag E.

J Am Med Inform Assoc. 2010 Sep-Oct;17(5):514-8. doi: 10.1136/jamia.2010.003947.

8.

Supporting retrieval of diverse biomedical data using evidence-aware queries.

Cadag E, Tarczy-Hornoch P.

J Biomed Inform. 2010 Dec;43(6):873-82. doi: 10.1016/j.jbi.2010.07.005. Epub 2010 Jul 17.

9.

Evaluation of probabilistic and logical inference for a SNP annotation system.

Shen TH, Tarczy-Hornoch P, Detwiler LT, Cadag E, Carlson CS.

J Biomed Inform. 2010 Jun;43(3):407-18. doi: 10.1016/j.jbi.2009.12.002. Epub 2009 Dec 14.

10.

Learning pathogenic proteins across fractured and heterogeneous data.

Cadag E, Tarczy-Hornoch P, Myler PJ.

AMIA Annu Symp Proc. 2008 Nov 6:889.

PMID:
18999001
11.

Biomediator data integration and inference for functional annotation of anonymous sequences.

Cadag E, Louie B, Myler PJ, Tarczy-Hornoch P.

Pac Symp Biocomput. 2007:343-54.

12.

The genome of the kinetoplastid parasite, Leishmania major.

Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, Sisk E, Rajandream MA, Adlem E, Aert R, Anupama A, Apostolou Z, Attipoe P, Bason N, Bauser C, Beck A, Beverley SM, Bianchettin G, Borzym K, Bothe G, Bruschi CV, Collins M, Cadag E, Ciarloni L, Clayton C, Coulson RM, Cronin A, Cruz AK, Davies RM, De Gaudenzi J, Dobson DE, Duesterhoeft A, Fazelina G, Fosker N, Frasch AC, Fraser A, Fuchs M, Gabel C, Goble A, Goffeau A, Harris D, Hertz-Fowler C, Hilbert H, Horn D, Huang Y, Klages S, Knights A, Kube M, Larke N, Litvin L, Lord A, Louie T, Marra M, Masuy D, Matthews K, Michaeli S, Mottram JC, Müller-Auer S, Munden H, Nelson S, Norbertczak H, Oliver K, O'neil S, Pentony M, Pohl TM, Price C, Purnelle B, Quail MA, Rabbinowitsch E, Reinhardt R, Rieger M, Rinta J, Robben J, Robertson L, Ruiz JC, Rutter S, Saunders D, Schäfer M, Schein J, Schwartz DC, Seeger K, Seyler A, Sharp S, Shin H, Sivam D, Squares R, Squares S, Tosato V, Vogt C, Volckaert G, Wambutt R, Warren T, Wedler H, Woodward J, Zhou S, Zimmermann W, Smith DF, Blackwell JM, Stuart KD, Barrell B, Myler PJ.

Science. 2005 Jul 15;309(5733):436-42.

13.

The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.

El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S, Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B.

Science. 2005 Jul 15;309(5733):409-15.

14.

Comparative genomics of trypanosomatid parasitic protozoa.

El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N.

Science. 2005 Jul 15;309(5733):404-9.

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