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Items: 1 to 20 of 58

1.

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.

Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, Abrahamsen M, Pyrkosz AB, Morisson M, Fillon V, Vignal A, Chow W, Howe K, Fulton JE, Miller MM, Lovell P, Mello CV, Wirthlin M, Mason AS, Kuo R, Burt DW, Dodgson JB, Cheng HH.

G3 (Bethesda). 2017 Jan 5;7(1):109-117. doi: 10.1534/g3.116.035923.

2.

A new look at the LTR retrotransposon content of the chicken genome.

Mason AS, Fulton JE, Hocking PM, Burt DW.

BMC Genomics. 2016 Aug 30;17:688. doi: 10.1186/s12864-016-3043-1.

3.

A strategy to discover new organizers identifies a putative heart organizer.

Anderson C, Khan MA, Wong F, Solovieva T, Oliveira NM, Baldock RA, Tickle C, Burt DW, Stern CD.

Nat Commun. 2016 Aug 25;7:12656. doi: 10.1038/ncomms12656.

4.

Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.

Farré M, Narayan J, Slavov GT, Damas J, Auvil L, Li C, Jarvis ED, Burt DW, Griffin DK, Larkin DM.

Genome Biol Evol. 2016 Aug 25;8(8):2442-51. doi: 10.1093/gbe/evw166.

5.

Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken.

Wragg D, Mason AS, Yu L, Kuo R, Lawal RA, Desta TT, Mwacharo JM, Cho CY, Kemp S, Burt DW, Hanotte O.

BMC Genomics. 2015 Oct 14;16:784. doi: 10.1186/s12864-015-1954-x.

6.

The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds.

Smith J, Sadeyen JR, Cavanagh D, Kaiser P, Burt DW.

BMC Vet Res. 2015 Oct 9;11:256. doi: 10.1186/s12917-015-0575-6.

7.

Binary Switching of Calendar Cells in the Pituitary Defines the Phase of the Circannual Cycle in Mammals.

Wood SH, Christian HC, Miedzinska K, Saer BR, Johnson M, Paton B, Yu L, McNeilly J, Davis JR, McNeilly AS, Burt DW, Loudon AS.

Curr Biol. 2015 Oct 19;25(20):2651-62. doi: 10.1016/j.cub.2015.09.014.

8.

Evolution of the avian β-defensin and cathelicidin genes.

Cheng Y, Prickett MD, Gutowska W, Kuo R, Belov K, Burt DW.

BMC Evol Biol. 2015 Sep 15;15:188. doi: 10.1186/s12862-015-0465-3.

9.

Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. No abstract available.

10.

Transcriptomic Profiling of Virus-Host Cell Interactions following Chicken Anaemia Virus (CAV) Infection in an In Vivo Model.

Giotis ES, Rothwell L, Scott A, Hu T, Talbot R, Todd D, Burt DW, Glass EJ, Kaiser P.

PLoS One. 2015 Aug 5;10(8):e0134866. doi: 10.1371/journal.pone.0134866.

11.

A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance.

Smith J, Smith N, Yu L, Paton IR, Gutowska MW, Forrest HL, Danner AF, Seiler JP, Digard P, Webster RG, Burt DW.

BMC Genomics. 2015 Aug 4;16:574. doi: 10.1186/s12864-015-1778-8.

12.

Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes.

Boschiero C, Gheyas AA, Ralph HK, Eory L, Paton B, Kuo R, Fulton J, Preisinger R, Kaiser P, Burt DW.

BMC Genomics. 2015 Jul 31;16:562. doi: 10.1186/s12864-015-1711-1.

13.

Functional classification of 15 million SNPs detected from diverse chicken populations.

Gheyas AA, Boschiero C, Eory L, Ralph H, Kuo R, Woolliams JA, Burt DW.

DNA Res. 2015 Jun;22(3):205-17. doi: 10.1093/dnares/dsv005.

14.

The development and maintenance of the mononuclear phagocyte system of the chick is controlled by signals from the macrophage colony-stimulating factor receptor.

Garceau V, Balic A, Garcia-Morales C, Sauter KA, McGrew MJ, Smith J, Vervelde L, Sherman A, Fuller TE, Oliphant T, Shelley JA, Tiwari R, Wilson TL, Chintoan-Uta C, Burt DW, Stevens MP, Sang HM, Hume DA.

BMC Biol. 2015 Feb 19;13:12. doi: 10.1186/s12915-015-0121-9.

15.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium..

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.

16.

Characterization of the avian Trojan gene family reveals contrasting evolutionary constraints.

Petrov P, Syrjänen R, Smith J, Gutowska MW, Uchida T, Vainio O, Burt DW.

PLoS One. 2015 Mar 24;10(3):e0121672. doi: 10.1371/journal.pone.0121672.

17.

Avianbase: a community resource for bird genomics.

Eöry L, Gilbert MT, Li C, Li B, Archibald A, Aken BL, Zhang G, Jarvis E, Flicek P, Burt DW.

Genome Biol. 2015 Jan 29;16:21. doi: 10.1186/s13059-015-0588-2.

18.

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.

Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, Zhang Y, Lang Y, Xia J, He W, Shi Q, Subramanian S, Millar CD, Meader S, Rands CM, Fujita MK, Greenwold MJ, Castoe TA, Pollock DD, Gu W, Nam K, Ellegren H, Ho SY, Burt DW, Ponting CP, Jarvis ED, Gilbert MT, Yang H, Wang J, Lambert DM, Wang J, Zhang G.

Gigascience. 2014 Dec 12;3(1):27. doi: 10.1186/2047-217X-3-27.

19.

Cetaceans evolution: insights from the genome sequences of common minke whales.

Park JY, An YR, Kanda N, An CM, An HS, Kang JH, Kim EM, An DH, Jung H, Joung M, Park MH, Yoon SH, Lee BY, Lee T, Kim KW, Park WC, Shin DH, Lee YS, Kim J, Kwak W, Kim HJ, Kwon YJ, Moon S, Kim Y, Burt DW, Cho S, Kim H.

BMC Genomics. 2015 Jan 22;16:13. doi: 10.1186/s12864-015-1213-1.

20.

Analysis of the early immune response to infection by infectious bursal disease virus in chickens differing in their resistance to the disease.

Smith J, Sadeyen JR, Butter C, Kaiser P, Burt DW.

J Virol. 2015 Mar;89(5):2469-82. doi: 10.1128/JVI.02828-14.

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