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MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing.

Neerincx M, Sie DL, van de Wiel MA, van Grieken NC, Burggraaf JD, Dekker H, Eijk PP, Ylstra B, Verhoef C, Meijer GA, Buffart TE, Verheul HM.

Oncogenesis. 2015 Oct 5;4:e170. doi: 10.1038/oncsis.2015.29.


ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs.

van de Wiel MA, Neerincx M, Buffart TE, Sie D, Verheul HM.

BMC Bioinformatics. 2014 Apr 26;15:116. doi: 10.1186/1471-2105-15-116.


High-level copy number gains of established and potential drug target genes in gastric cancer as a lead for treatment development and selection.

Labots M, Buffart TE, Haan JC, van Grieken NC, Tijssen M, van de Velde CJ, Grabsch HI, Ylstra B, Carvalho B, Fijneman RJ, Verheul HM, Meijer GA.

Cell Oncol (Dordr). 2014 Feb;37(1):41-52. doi: 10.1007/s13402-013-0162-4.


[Liver disorders in adults: ALT and AST].

Goorden SM, Buffart TE, Bakker A, Buijs MM.

Ned Tijdschr Geneeskd. 2013;157(43):A6443. Dutch.


The future of colorectal cancer: implications of screening.

Neerincx M, Buffart TE, Mulder CJ, Meijer GA, Verheul HM.

Gut. 2013 Oct;62(10):1387-9. doi: 10.1136/gutjnl-2013-305023. No abstract available.


KRAS and BRAF mutations are rare and related to DNA mismatch repair deficiency in gastric cancer from the East and the West: results from a large international multicentre study.

van Grieken NC, Aoyama T, Chambers PA, Bottomley D, Ward LC, Inam I, Buffart TE, Das K, Lim T, Pang B, Zhang SL, Tan IB, Carvalho B, Heideman DA, Miyagi Y, Kameda Y, Arai T, Meijer GA, Tsuburaya A, Tan P, Yoshikawa T, Grabsch HI.

Br J Cancer. 2013 Apr 16;108(7):1495-501. doi: 10.1038/bjc.2013.109. Erratum in: Br J Cancer. 2014 Jan 21;110(2):546. Aoyma, T [corrected to Aoyama, T].


Losses of chromosome 5q and 14q are associated with favorable clinical outcome of patients with gastric cancer.

Buffart TE, Carvalho B, van Grieken NC, van Wieringen WN, Tijssen M, Kranenbarg EM, Verheul HM, Grabsch HI, Ylstra B, van de Velde CJ, Meijer GA.

Oncologist. 2012;17(5):653-62. doi: 10.1634/theoncologist.2010-0379.


Lack of microRNA-101 causes E-cadherin functional deregulation through EZH2 up-regulation in intestinal gastric cancer.

Carvalho J, van Grieken NC, Pereira PM, Sousa S, Tijssen M, Buffart TE, Diosdado B, Grabsch H, Santos MA, Meijer G, Seruca R, Carvalho B, Oliveira C.

J Pathol. 2012 Sep;228(1):31-44. doi: 10.1002/path.4032.


Deletion of chromosome 4q predicts outcome in stage II colon cancer patients.

Brosens RP, Belt EJ, Haan JC, Buffart TE, Carvalho B, Grabsch H, Quirke P, Cuesta MA, Engel AF, Ylstra B, Meijer GA.

Cell Oncol (Dordr). 2011 Jun;34(3):215-23. doi: 10.1007/s13402-011-0042-8.


Small bowel adenocarcinoma copy number profiles are more closely related to colorectal than to gastric cancers.

Haan JC, Buffart TE, Eijk PP, van de Wiel MA, van Wieringen WN, Howdle PD, Mulder CJ, van de Velde CJ, Quirke P, Nagtegaal ID, van Grieken NC, Grabsch H, Meijer GA, Ylstra B.

Ann Oncol. 2012 Feb;23(2):367-74. doi: 10.1093/annonc/mdr122.


Gastric cancers of Western European and African patients show different patterns of genomic instability.

Buffart TE, Louw M, van Grieken NC, Tijssen M, Carvalho B, Ylstra B, Grabsch H, Mulder CJ, van de Velde CJ, van der Merwe SW, Meijer GA.

BMC Med Genomics. 2011 Jan 13;4:7. doi: 10.1186/1755-8794-4-7.


Deletion of chromosome 4q predicts outcome in stage II colon cancer patients.

Brosens RP, Belt EJ, Haan JC, Buffart TE, Carvalho B, Grabsch H, Quirke P, Cuesta MA, Engel AF, Ylstra B, Meijer GA.

Anal Cell Pathol (Amst). 2010;33(2):95-104. doi: 10.3233/ACP-CLO-2010-0531.


High-resolution array comparative genomic hybridization in sporadic and celiac disease-related small bowel adenocarcinomas.

Diosdado B, Buffart TE, Watkins R, Carvalho B, Ylstra B, Tijssen M, Bolijn AS, Lewis F, Maude K, Verbeke C, Nagtegaal ID, Grabsch H, Mulder CJ, Quirke P, Howdle P, Meijer GA.

Clin Cancer Res. 2010 Mar 1;16(5):1391-401. doi: 10.1158/1078-0432.CCR-09-1773.


Gross genomic damage measured by DNA image cytometry independently predicts gastric cancer patient survival.

Belien JA, Buffart TE, Gill AJ, Broeckaert MA, Quirke P, Meijer GA, Grabsch HI.

Br J Cancer. 2009 Sep 15;101(6):1011-8. doi: 10.1038/sj.bjc.6605266.


High resolution analysis of DNA copy-number aberrations of chromosomes 8, 13, and 20 in gastric cancers.

Buffart TE, van Grieken NC, Tijssen M, Coffa J, Ylstra B, Grabsch HI, van de Velde CJ, Carvalho B, Meijer GA.

Virchows Arch. 2009 Sep;455(3):213-23. doi: 10.1007/s00428-009-0814-y.


NMD inhibition fails to identify tumour suppressor genes in microsatellite stable gastric cancer cell lines.

Buffart TE, Tijssen M, El-Bchiri J, Duval A, van de Wiel MA, Ylstra B, Meijer GA, Carvalho B.

BMC Med Genomics. 2009 Jun 29;2:39. doi: 10.1186/1755-8794-2-39.


DNA copy number profiles of primary tumors as predictors of response to chemotherapy in advanced colorectal cancer.

Postma C, Koopman M, Buffart TE, Eijk PP, Carvalho B, Peters GJ, Ylstra B, van Krieken JH, Punt CJ, Meijer GA.

Ann Oncol. 2009 Jun;20(6):1048-56. doi: 10.1093/annonc/mdn738.


MAL promoter hypermethylation as a novel prognostic marker in gastric cancer.

Buffart TE, Overmeer RM, Steenbergen RD, Tijssen M, van Grieken NC, Snijders PJ, Grabsch HI, van de Velde CJ, Carvalho B, Meijer GA.

Br J Cancer. 2008 Dec 2;99(11):1802-7. doi: 10.1038/sj.bjc.6604777.


Across array comparative genomic hybridization: a strategy to reduce reference channel hybridizations.

Buffart TE, Israeli D, Tijssen M, Vosse SJ, Mrsić A, Meijer GA, Ylstra B.

Genes Chromosomes Cancer. 2008 Nov;47(11):994-1004. doi: 10.1002/gcc.20605.


Acquired genomic aberrations associated with methotrexate resistance vary with background genomic instability.

Snijders AM, Hermsen MA, Baughman J, Buffart TE, Huey B, Gajduskova P, Roydasgupta R, Tokuyasu T, Meijer GA, Fridlyand J, Albertson DG.

Genes Chromosomes Cancer. 2008 Jan;47(1):71-83.

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