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Items: 1 to 20 of 99

1.

Promoter Architecture and Sex-Specific Gene Expression in Daphnia pulex.

Raborn RT, Spitze K, Brendel VP, Lynch M.

Genetics. 2016 Oct;204(2):593-612. Epub 2016 Aug 31.

PMID:
27585846
2.

xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud.

Duvick J, Standage DS, Merchant N, Brendel VP.

Plant Cell. 2016 Apr;28(4):840-54. doi: 10.1105/tpc.15.00933. Epub 2016 Mar 28.

3.

Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect.

Standage DS, Berens AJ, Glastad KM, Severin AJ, Brendel VP, Toth AL.

Mol Ecol. 2016 Apr;25(8):1769-84. doi: 10.1111/mec.13578. Epub 2016 Mar 15.

PMID:
26859767
4.

Discovery and expression analysis of alternative splicing events conserved among plant SR proteins.

Rauch HB, Patrick TL, Klusman KM, Battistuzzi FU, Mei W, Brendel VP, Lal SK.

Mol Biol Evol. 2014 Mar;31(3):605-13. doi: 10.1093/molbev/mst238. Epub 2013 Dec 19.

PMID:
24356560
5.

Single nucleotide polymorphisms of human STING can affect innate immune response to cyclic dinucleotides.

Yi G, Brendel VP, Shu C, Li P, Palanathan S, Cheng Kao C.

PLoS One. 2013 Oct 21;8(10):e77846. doi: 10.1371/journal.pone.0077846. eCollection 2013.

6.

Development of p21 activated kinase-targeted multikinase inhibitors that inhibit thyroid cancer cell migration.

Ma Y, McCarty SK, Kapuriya NP, Brendel VJ, Wang C, Zhang X, Jarjoura D, Saji M, Chen CS, Ringel MD.

J Clin Endocrinol Metab. 2013 Aug;98(8):E1314-22. doi: 10.1210/jc.2012-3937. Epub 2013 May 24. Erratum in: J Clin Endocrinol Metab. 2016 Mar;101(3):1314.

7.

ParsEval: parallel comparison and analysis of gene structure annotations.

Standage DS, Brendel VP.

BMC Bioinformatics. 2012 Aug 1;13:187. doi: 10.1186/1471-2105-13-187.

8.

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.

Doyle EL, Booher NJ, Standage DS, Voytas DF, Brendel VP, Vandyk JK, Bogdanove AJ.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W117-22. doi: 10.1093/nar/gks608. Epub 2012 Jun 12.

9.

Sorafenib and Mek inhibition is synergistic in medullary thyroid carcinoma in vitro.

Koh YW, Shah MH, Agarwal K, McCarty SK, Koo BS, Brendel VJ, Wang C, Porter K, Jarjoura D, Saji M, Ringel MD.

Endocr Relat Cancer. 2012 Jan 9;19(1):29-38. doi: 10.1530/ERC-11-0155. Print 2012 Feb.

10.

Preclinical validation of AR42, a novel histone deacetylase inhibitor, as treatment for vestibular schwannomas.

Jacob A, Oblinger J, Bush ML, Brendel V, Santarelli G, Chaudhury AR, Kulp S, La Perle KM, Chen CS, Chang LS, Welling DB.

Laryngoscope. 2012 Jan;122(1):174-89. doi: 10.1002/lary.22392. Epub 2011 Nov 22.

11.

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.

12.

AR42, a novel histone deacetylase inhibitor, as a potential therapy for vestibular schwannomas and meningiomas.

Bush ML, Oblinger J, Brendel V, Santarelli G, Huang J, Akhmametyeva EM, Burns SS, Wheeler J, Davis J, Yates CW, Chaudhury AR, Kulp S, Chen CS, Chang LS, Welling DB, Jacob A.

Neuro Oncol. 2011 Sep;13(9):983-99. doi: 10.1093/neuonc/nor072. Epub 2011 Jul 21.

13.

The BioExtract Server: a web-based bioinformatic workflow platform.

Lushbough CM, Jennewein DM, Brendel VP.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W528-32. doi: 10.1093/nar/gkr286. Epub 2011 May 5.

14.

An overview of the BioExtract Server: a distributed, Web-based system for genomic analysis.

Lushbough CM, Brendel VP.

Adv Exp Med Biol. 2010;680:361-9. doi: 10.1007/978-1-4419-5913-3_41.

PMID:
20865520
15.

An international bioinformatics infrastructure to underpin the Arabidopsis community.

International Arabidopsis Informatics Consortium.

Plant Cell. 2010 Aug;22(8):2530-6. doi: 10.1105/tpc.110.078519. Epub 2010 Aug 31.

16.

Genome-wide distribution of transposed Dissociation elements in maize.

Vollbrecht E, Duvick J, Schares JP, Ahern KR, Deewatthanawong P, Xu L, Conrad LJ, Kikuchi K, Kubinec TA, Hall BD, Weeks R, Unger-Wallace E, Muszynski M, Brendel VP, Brutnell TP.

Plant Cell. 2010 Jun;22(6):1667-85. doi: 10.1105/tpc.109.073452. Epub 2010 Jun 25.

17.

BioExtract server--an integrated workflow-enabling system to access and analyze heterogeneous, distributed biomolecular data.

Lushbough C, Bergman MK, Lawrence CJ, Jennewein D, Brendel V.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):12-24. doi: 10.1109/TCBB.2008.98.

PMID:
20150665
18.

Common introns within orthologous genes: software and application to plants.

Wilkerson MD, Ru Y, Brendel VP.

Brief Bioinform. 2009 Nov;10(6):631-44. doi: 10.1093/bib/bbp051.

PMID:
19933210
19.

Regional mutagenesis using Dissociation in maize.

Ahern KR, Deewatthanawong P, Schares J, Muszynski M, Weeks R, Vollbrecht E, Duvick J, Brendel VP, Brutnell TP.

Methods. 2009 Nov;49(3):248-54. doi: 10.1016/j.ymeth.2009.04.009. Epub 2009 Apr 24.

PMID:
19394430
20.

MaizeGDB becomes 'sequence-centric'.

Sen TZ, Andorf CM, Schaeffer ML, Harper LC, Sparks ME, Duvick J, Brendel VP, Cannon E, Campbell DA, Lawrence CJ.

Database (Oxford). 2009;2009:bap020. doi: 10.1093/database/bap020. Epub 2009 Dec 7.

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