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Items: 1 to 20 of 39

1.

Genetic mapping of principal components of canine pelvic morphology.

Fealey MJ, Li J, Todhunter RJ, Krotscheck U, Hayashi K, McConkey MJ, Boyko AR, Hayward JJ, Todhunter RJ.

Canine Genet Epidemiol. 2017 Mar 24;4:4. doi: 10.1186/s40575-017-0043-7. eCollection 2017 Mar 24.

2.

A Pedigree-Based Map of Recombination in the Domestic Dog Genome.

Campbell CL, Bhérer C, Morrow BE, Boyko AR, Auton A.

G3 (Bethesda). 2016 Sep 2. pii: g3.116.034678. doi: 10.1534/g3.116.034678. [Epub ahead of print]

3.

Reply to Wang et al.: Sequencing datasets do not refute Central Asian domestication origin of dogs.

Shannon LM, Boyko RH, Castelhano M, Corey E, Hayward JJ, McLean C, White ME, Abi Said MR, Anita BA, Bondjengo NI, Calero J, Galov A, Hedimbi M, Imam B, Khalap R, Lally D, Masta A, Oliveira KC, Pérez L, Randall J, Tam NM, Trujillo-Cornejo FJ, Valeriano C, Sutter NB, Todhunter RJ, Bustamante CD, Boyko AR.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2556-7. doi: 10.1073/pnas.1600618113. Epub 2016 Apr 20. No abstract available.

4.

Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs.

Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Marques-Bonet T, Ostrander EA, Wayne RK, Novembre J.

PLoS Genet. 2016 Mar 4;12(3):e1005851. doi: 10.1371/journal.pgen.1005851. eCollection 2016 Mar 4.

5.

Complex disease and phenotype mapping in the domestic dog.

Hayward JJ, Castelhano MG, Oliveira KC, Corey E, Balkman C, Baxter TL, Casal ML, Center SA, Fang M, Garrison SJ, Kalla SE, Korniliev P, Kotlikoff MI, Moise NS, Shannon LM, Simpson KW, Sutter NB, Todhunter RJ, Boyko AR.

Nat Commun. 2016 Jan 22;7:10460. doi: 10.1038/ncomms10460.

6.

Genetic Mapping of Novel Loci Affecting Canine Blood Phenotypes.

White ME, Hayward JJ, Stokol T, Boyko AR.

PLoS One. 2015 Dec 18;10(12):e0145199. doi: 10.1371/journal.pone.0145199. eCollection 2015 Dec 18.

7.

Evaluating the performance of selection scans to detect selective sweeps in domestic dogs.

Schlamp F, van der Made J, Stambler R, Chesebrough L, Boyko AR, Messer PW.

Mol Ecol. 2016 Jan;25(1):342-56. doi: 10.1111/mec.13485.

8.

Genetic structure in village dogs reveals a Central Asian domestication origin.

Shannon LM, Boyko RH, Castelhano M, Corey E, Hayward JJ, McLean C, White ME, Abi Said M, Anita BA, Bondjengo NI, Calero J, Galov A, Hedimbi M, Imam B, Khalap R, Lally D, Masta A, Oliveira KC, Pérez L, Randall J, Tam NM, Trujillo-Cornejo FJ, Valeriano C, Sutter NB, Todhunter RJ, Bustamante CD, Boyko AR.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13639-44. doi: 10.1073/pnas.1516215112. Epub 2015 Oct 19.

9.

Candidate genes and functional noncoding variants identified in a canine model of obsessive-compulsive disorder.

Tang R, Noh HJ, Wang D, Sigurdsson S, Swofford R, Perloski M, Duxbury M, Patterson EE, Albright J, Castelhano M, Auton A, Boyko AR, Feng G, Lindblad-Toh K, Karlsson EK.

Genome Biol. 2014 Mar 14;15(3):R25. doi: 10.1186/gb-2014-15-3-r25.

10.

Genomic analysis establishes correlation between growth and laryngeal neuropathy in Thoroughbreds.

Boyko AR, Brooks SA, Behan-Braman A, Castelhano M, Corey E, Oliveira KC, Swinburne JE, Todhunter RJ, Zhang Z, Ainsworth DM, Robinson NE.

BMC Genomics. 2014 Apr 3;15:259. doi: 10.1186/1471-2164-15-259.

11.

Population variation revealed high-altitude adaptation of Tibetan mastiffs.

Li Y, Wu DD, Boyko AR, Wang GD, Wu SF, Irwin DM, Zhang YP.

Mol Biol Evol. 2014 May;31(5):1200-5. doi: 10.1093/molbev/msu070. Epub 2014 Feb 11.

PMID:
24520091
12.

Genome sequencing highlights the dynamic early history of dogs.

Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Wilton A, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Ostrander EA, Marques-Bonet T, Wayne RK, Novembre J.

PLoS Genet. 2014 Jan;10(1):e1004016. doi: 10.1371/journal.pgen.1004016. Epub 2014 Jan 16. Erratum in: PLoS Genet. 2014 Aug;10(8):e1004631. Wilton, Alan [added].

13.

Genetic recombination is targeted towards gene promoter regions in dogs.

Auton A, Rui Li Y, Kidd J, Oliveira K, Nadel J, Holloway JK, Hayward JJ, Cohen PE, Greally JM, Wang J, Bustamante CD, Boyko AR.

PLoS Genet. 2013;9(12):e1003984. doi: 10.1371/journal.pgen.1003984. Epub 2013 Dec 12.

14.

IQCB1 and PDE6B mutations cause similar early onset retinal degenerations in two closely related terrier dog breeds.

Goldstein O, Mezey JG, Schweitzer PA, Boyko AR, Gao C, Bustamante CD, Jordan JA, Aguirre GD, Acland GM.

Invest Ophthalmol Vis Sci. 2013 Oct 25;54(10):7005-19. doi: 10.1167/iovs.13-12915.

15.

Artificial selection on brain-expressed genes during the domestication of dog.

Li Y, Vonholdt BM, Reynolds A, Boyko AR, Wayne RK, Wu DD, Zhang YP.

Mol Biol Evol. 2013 Aug;30(8):1867-76. doi: 10.1093/molbev/mst088. Epub 2013 May 8.

PMID:
23660689
16.

Variation of BMP3 contributes to dog breed skull diversity.

Schoenebeck JJ, Hutchinson SA, Byers A, Beale HC, Carrington B, Faden DL, Rimbault M, Decker B, Kidd JM, Sood R, Boyko AR, Fondon JW 3rd, Wayne RK, Bustamante CD, Ciruna B, Ostrander EA.

PLoS Genet. 2012;8(8):e1002849. doi: 10.1371/journal.pgen.1002849. Epub 2012 Aug 2.

17.

Levels and patterns of nucleotide variation in domestication QTL regions on rice chromosome 3 suggest lineage-specific selection.

Xie X, Molina J, Hernandez R, Reynolds A, Boyko AR, Bustamante CD, Purugganan MD.

PLoS One. 2011;6(6):e20670. doi: 10.1371/journal.pone.0020670. Epub 2011 Jun 6.

18.

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids.

vonHoldt BM, Pollinger JP, Earl DA, Knowles JC, Boyko AR, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, Sidorovich V, Greco C, Randi E, Musiani M, Kays R, Bustamante CD, Ostrander EA, Novembre J, Wayne RK.

Genome Res. 2011 Aug;21(8):1294-305. doi: 10.1101/gr.116301.110. Epub 2011 May 12.

19.

Molecular evidence for a single evolutionary origin of domesticated rice.

Molina J, Sikora M, Garud N, Flowers JM, Rubinstein S, Reynolds A, Huang P, Jackson S, Schaal BA, Bustamante CD, Boyko AR, Purugganan MD.

Proc Natl Acad Sci U S A. 2011 May 17;108(20):8351-6. doi: 10.1073/pnas.1104686108. Epub 2011 May 2.

20.

A population genetic approach to mapping neurological disorder genes using deep resequencing.

Myers RA, Casals F, Gauthier J, Hamdan FF, Keebler J, Boyko AR, Bustamante CD, Piton AM, Spiegelman D, Henrion E, Zilversmit M, Hussin J, Quinlan J, Yang Y, Lafrenière RG, Griffing AR, Stone EA, Rouleau GA, Awadalla P.

PLoS Genet. 2011 Feb;7(2):e1001318. doi: 10.1371/journal.pgen.1001318. Epub 2011 Feb 24.

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