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Items: 1 to 20 of 43

1.

Organellar genomes of the four-toothed moss, Tetraphis pellucida.

Bell NE, Boore JL, Mishler BD, Hyvönen J.

BMC Genomics. 2014 May 19;15:383. doi: 10.1186/1471-2164-15-383.

2.

Insights into bilaterian evolution from three spiralian genomes.

Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, Shapiro H, Aerts A, Otillar RP, Terry AY, Boore JL, Grigoriev IV, Lindberg DR, Seaver EC, Weisblat DA, Putnam NH, Rokhsar DS.

Nature. 2013 Jan 24;493(7433):526-31. doi: 10.1038/nature11696. Epub 2012 Dec 19.

3.

Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana.

Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC.

Nat Commun. 2012 Feb 21;3:686. doi: 10.1038/ncomms1688. Erratum in: Nat Commun. 2013;4. doi:10.1038/ncomms3356.

4.

Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution.

Murtagh VJ, O'Meally D, Sankovic N, Delbridge ML, Kuroki Y, Boore JL, Toyoda A, Jordan KS, Pask AJ, Renfree MB, Fujiyama A, Graves JA, Waters PD.

Genome Res. 2012 Mar;22(3):498-507. doi: 10.1101/gr.120790.111. Epub 2011 Nov 29.

5.

The monarch butterfly genome yields insights into long-distance migration.

Zhan S, Merlin C, Boore JL, Reppert SM.

Cell. 2011 Nov 23;147(5):1171-85. doi: 10.1016/j.cell.2011.09.052.

6.

Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes.

O'Quin KE, Smith D, Naseer Z, Schulte J, Engel SD, Loh YH, Streelman JT, Boore JL, Carleton KL.

BMC Evol Biol. 2011 May 9;11:120. doi: 10.1186/1471-2148-11-120.

7.

The ecoresponsive genome of Daphnia pulex.

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.

Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761.

8.

Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome.

Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong A, Anderson R, Badejoko W, Bittner-Eddy P, Boore JL, Chibucos MC, Coates M, Dehal P, Delehaunty K, Dong S, Downton P, Dumas B, Fabro G, Fronick C, Fuerstenberg SI, Fulton L, Gaulin E, Govers F, Hughes L, Humphray S, Jiang RHY, Judelson H, Kamoun S, Kyung K, Meijer H, Minx P, Morris P, Nelson J, Phuntumart V, Qutob D, Rehmany A, Rougon-Cardoso A, Ryden P, Torto-Alalibo T, Studholme D, Wang Y, Win J, Wood J, Clifton SW, Rogers J, Van den Ackerveken G, Jones JDG, McDowell JM, Beynon J, Tyler BM.

Science. 2010 Dec 10;330(6010):1549-1551. doi: 10.1126/science.1195203.

9.

Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages.

Karol KG, Arumuganathan K, Boore JL, Duffy AM, Everett KD, Hall JD, Hansen SK, Kuehl JV, Mandoli DF, Mishler BD, Olmstead RG, Renzaglia KS, Wolf PG.

BMC Evol Biol. 2010 Oct 23;10:321. doi: 10.1186/1471-2148-10-321.

10.

Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs.

Rawlings TA, MacInnis MJ, Bieler R, Boore JL, Collins TM.

BMC Genomics. 2010 Jul 19;11:440. doi: 10.1186/1471-2164-11-440.

11.

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.

Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, Ferriera S, Fuerstenberg SI, Gachon CM, Gaulin E, Govers F, Grenville-Briggs L, Horner N, Hostetler J, Jiang RH, Johnson J, Krajaejun T, Lin H, Meijer HJ, Moore B, Morris P, Phuntmart V, Puiu D, Shetty J, Stajich JE, Tripathy S, Wawra S, van West P, Whitty BR, Coutinho PM, Henrissat B, Martin F, Thomas PD, Tyler BM, De Vries RP, Kamoun S, Yandell M, Tisserat N, Buell CR.

Genome Biol. 2010;11(7):R73. doi: 10.1186/gb-2010-11-7-r73. Epub 2010 Jul 13.

12.

Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda.

Rota-Stabelli O, Kayal E, Gleeson D, Daub J, Boore JL, Telford MJ, Pisani D, Blaxter M, Lavrov DV.

Genome Biol Evol. 2010 Jul 12;2:425-40. doi: 10.1093/gbe/evq030.

13.

Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes.

Oliver MJ, Murdock AG, Mishler BD, Kuehl JV, Boore JL, Mandoli DF, Everett KD, Wolf PG, Duffy AM, Karol KG.

BMC Genomics. 2010 Feb 27;11:143. doi: 10.1186/1471-2164-11-143.

14.

Implications of the plastid genome sequence of typha (typhaceae, poales) for understanding genome evolution in poaceae.

Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK.

J Mol Evol. 2010 Feb;70(2):149-66. doi: 10.1007/s00239-009-9317-3. Epub 2010 Jan 21.

15.
16.

Parallel loss of plastid introns and their maturase in the genus Cuscuta.

McNeal JR, Kuehl JV, Boore JL, Leebens-Mack J, dePamphilis CW.

PLoS One. 2009 Jun 19;4(6):e5982. doi: 10.1371/journal.pone.0005982.

17.

Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions.

Guisinger MM, Kuehl JV, Boore JL, Jansen RK.

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18424-9. doi: 10.1073/pnas.0806759105. Epub 2008 Nov 14.

18.

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates.

McCoy SR, Kuehl JV, Boore JL, Raubeson LA.

BMC Evol Biol. 2008 May 1;8:130. doi: 10.1186/1471-2148-8-130.

19.

Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders.

Mueller RL, Gregory TR, Gregory SM, Hsieh A, Boore JL.

Zoology (Jena). 2008;111(3):218-30. doi: 10.1016/j.zool.2007.07.010. Epub 2008 Mar 6.

20.

Group II introns break new boundaries: presence in a bilaterian's genome.

Vallès Y, Halanych KM, Boore JL.

PLoS One. 2008 Jan 23;3(1):e1488. doi: 10.1371/journal.pone.0001488.

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