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Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.

Wang D, Horton JR, Zheng Y, Blumenthal RM, Zhang X, Cheng X.

Nucleic Acids Res. 2018 May 4;46(8):3864-3877. doi: 10.1093/nar/gkx1274.


Complementation of a metK-deficient E. coli strain with heterologous AdoMet synthetase genes.

Parungao GG, Zhao M, Wang Q, Zano SP, Viola RE, Blumenthal RM.

Microbiology. 2017 Dec;163(12):1812-1821. doi: 10.1099/mic.0.000565. Epub 2017 Nov 7.


Structural basis of human PR/SET domain 9 (PRDM9) allele C-specific recognition of its cognate DNA sequence.

Patel A, Zhang X, Blumenthal RM, Cheng X.

J Biol Chem. 2017 Sep 29;292(39):15994-16002. doi: 10.1074/jbc.M117.805754. Epub 2017 Aug 11.


Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.

Hong S, Wang D, Horton JR, Zhang X, Speck SH, Blumenthal RM, Cheng X.

Nucleic Acids Res. 2017 Mar 17;45(5):2503-2515. doi: 10.1093/nar/gkx057.


Distinctive Klf4 mutants determine preference for DNA methylation status.

Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X.

Nucleic Acids Res. 2016 Dec 1;44(21):10177-10185. Epub 2016 Sep 4.


Evolution of a global regulator: Lrp in four orders of γ-Proteobacteria.

Unoarumhi Y, Blumenthal RM, Matson JS.

BMC Evol Biol. 2016 May 20;16(1):111. doi: 10.1186/s12862-016-0685-1.


Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.

Horton JR, Zhang X, Blumenthal RM, Cheng X.

Nucleic Acids Res. 2015 Apr 30;43(8):4296-308. doi: 10.1093/nar/gkv251. Epub 2015 Apr 6.


A surprising range of modified-methionyl S-adenosylmethionine analogues support bacterial growth.

Zhao M, Wijayasinghe YS, Bhansali P, Viola RE, Blumenthal RM.

Microbiology. 2015 Mar;161(Pt 3):674-82. doi: 10.1099/mic.0.000034.


Producing proficient methyl donors from alternative substrates of S-adenosylmethionine synthetase.

Wijayasinghe YS, Blumenthal RM, Viola RE.

Biochemistry. 2014 Mar 11;53(9):1521-6. doi: 10.1021/bi401556p. Epub 2014 Feb 21.


Structural basis for Klf4 recognition of methylated DNA.

Liu Y, Olanrewaju YO, Zheng Y, Hashimoto H, Blumenthal RM, Zhang X, Cheng X.

Nucleic Acids Res. 2014 Apr;42(8):4859-67. doi: 10.1093/nar/gku134. Epub 2014 Feb 11.


Naturally-occurring, dually-functional fusions between restriction endonucleases and regulatory proteins.

Liang J, Blumenthal RM.

BMC Evol Biol. 2013 Oct 2;13:218. doi: 10.1186/1471-2148-13-218.


The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.


Response to mackay et Al.

Cheng X, Blumenthal RM.

Trends Biochem Sci. 2013 Sep;38(9):423. doi: 10.1016/j.tibs.2013.06.010. No abstract available.


A bistable hysteretic switch in an activator-repressor regulated restriction-modification system.

Williams K, Savageau MA, Blumenthal RM.

Nucleic Acids Res. 2013 Jul;41(12):6045-57. doi: 10.1093/nar/gkt324. Epub 2013 Apr 29.


A common mode of recognition for methylated CpG.

Liu Y, Zhang X, Blumenthal RM, Cheng X.

Trends Biochem Sci. 2013 Apr;38(4):177-83. doi: 10.1016/j.tibs.2012.12.005. Epub 2013 Jan 23. Review.


Emergence, origin, and function of neutrophil-dendritic cell hybrids in experimentally induced inflammatory lesions in mice.

Geng S, Matsushima H, Okamoto T, Yao Y, Lu R, Page K, Blumenthal RM, Ward NL, Miyazaki T, Takashima A.

Blood. 2013 Mar 7;121(10):1690-700. doi: 10.1182/blood-2012-07-445197. Epub 2013 Jan 10.


Higher incidence of perineal community acquired MRSA infections among toddlers.

McCullough AC, Seifried M, Zhao X, Haase J, Kabat WJ, Yogev R, Blumenthal RM, Mukundan D.

BMC Pediatr. 2011 Oct 27;11:96. doi: 10.1186/1471-2431-11-96.


Recognition of DNA by the helix-turn-helix global regulatory protein Lrp is modulated by the amino terminus.

Hart BR, Mishra PK, Lintner RE, Hinerman JM, Herr AB, Blumenthal RM.

J Bacteriol. 2011 Aug;193(15):3794-803. doi: 10.1128/JB.00191-11. Epub 2011 Jun 3.


Introduction--Epiphanies in epigenetics.

Cheng X, Blumenthal RM.

Prog Mol Biol Transl Sci. 2011;101:1-21. doi: 10.1016/B978-0-12-387685-0.00001-9.


We would like to thank those who made this volume possible. Preface.

Cheng X, Blumenthal RM.

Prog Mol Biol Transl Sci. 2011;101:xiii-xiv. doi: 10.1016/B978-0-12-387685-0.00022-6. No abstract available.


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