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Items: 17

1.

The defence-associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias.

Powell JJ, Fitzgerald TL, Stiller J, Berkman PJ, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Plant Biotechnol J. 2017 Apr;15(4):533-543. doi: 10.1111/pbi.12651. Epub 2016 Nov 11.

2.

An efficient approach to BAC based assembly of complex genomes.

Visendi P, Berkman PJ, Hayashi S, Golicz AA, Bayer PE, Ruperao P, Hurgobin B, Montenegro J, Chan CK, Staňková H, Batley J, Šimková H, Doležel J, Edwards D.

Plant Methods. 2016 Jan 20;12:2. doi: 10.1186/s13007-016-0107-9. eCollection 2016.

3.

Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane.

Taniguti LM, Schaker PD, Benevenuto J, Peters LP, Carvalho G, Palhares A, Quecine MC, Nunes FR, Kmit MC, Wai A, Hausner G, Aitken KS, Berkman PJ, Fraser JA, Moolhuijzen PM, Coutinho LL, Creste S, Vieira ML, Kitajima JP, Monteiro-Vitorello CB.

PLoS One. 2015 Jun 12;10(6):e0129318. doi: 10.1371/journal.pone.0129318. eCollection 2015.

4.

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene.

Staňková H, Valárik M, Lapitan NL, Berkman PJ, Batley J, Edwards D, Luo MC, Tulpová Z, Kubaláková M, Stein N, Doležel J, Šimková H.

Theor Appl Genet. 2015 Jul;128(7):1373-83. doi: 10.1007/s00122-015-2512-2. Epub 2015 Apr 11.

PMID:
25862680
5.

Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat.

Lai K, Lorenc MT, Lee HC, Berkman PJ, Bayer PE, Visendi P, Ruperao P, Fitzgerald TL, Zander M, Chan CK, Manoli S, Stiller J, Batley J, Edwards D.

Plant Biotechnol J. 2015 Jan;13(1):97-104. doi: 10.1111/pbi.12240. Epub 2014 Aug 22.

6.

Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane.

Aitken KS, McNeil MD, Berkman PJ, Hermann S, Kilian A, Bundock PC, Li J.

BMC Plant Biol. 2014 Jul 26;14:190. doi: 10.1186/s12870-014-0190-x.

7.

Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.).

Ma J, Stiller J, Berkman PJ, Wei Y, Rogers J, Feuillet C, Dolezel J, Mayer KF, Eversole K, Zheng YL, Liu C.

PLoS One. 2013 Nov 15;8(11):e79329. doi: 10.1371/journal.pone.0079329. eCollection 2013.

8.

Dispersion and domestication shaped the genome of bread wheat.

Berkman PJ, Visendi P, Lee HC, Stiller J, Manoli S, Lorenc MT, Lai K, Batley J, Fleury D, Simková H, Kubaláková M, Weining S, Doležel J, Edwards D.

Plant Biotechnol J. 2013 Jun;11(5):564-71. doi: 10.1111/pbi.12044. Epub 2013 Jan 24.

9.

Single nucleotide polymorphism discovery from wheat next-generation sequence data.

Lai K, Duran C, Berkman PJ, Lorenc MT, Stiller J, Manoli S, Hayden MJ, Forrest KL, Fleury D, Baumann U, Zander M, Mason AS, Batley J, Edwards D.

Plant Biotechnol J. 2012 Aug;10(6):743-9. doi: 10.1111/j.1467-7652.2012.00718.x. Epub 2012 Jul 3.

10.

Next-generation sequencing applications for wheat crop improvement.

Berkman PJ, Lai K, Lorenc MT, Edwards D.

Am J Bot. 2012 Feb;99(2):365-71. doi: 10.3732/ajb.1100309. Epub 2012 Jan 20. Review.

11.

Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP.

Lorenc MT, Hayashi S, Stiller J, Lee H, Manoli S, Ruperao P, Visendi P, Berkman PJ, Lai K, Batley J, Edwards D.

Biology (Basel). 2012 Aug 27;1(2):370-82. doi: 10.3390/biology1020370.

12.

WheatGenome.info: an integrated database and portal for wheat genome information.

Lai K, Berkman PJ, Lorenc MT, Duran C, Smits L, Manoli S, Stiller J, Edwards D.

Plant Cell Physiol. 2012 Feb;53(2):e2. doi: 10.1093/pcp/pcr141. Epub 2011 Oct 18.

PMID:
22009731
13.

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation.

Berkman PJ, Skarshewski A, Manoli S, Lorenc MT, Stiller J, Smits L, Lai K, Campbell E, Kubaláková M, Simková H, Batley J, Doležel J, Hernandez P, Edwards D.

Theor Appl Genet. 2012 Feb;124(3):423-32. doi: 10.1007/s00122-011-1717-2. Epub 2011 Oct 15.

PMID:
22001910
14.

The genome of the mesopolyploid crop species Brassica rapa.

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z; Brassica rapa Genome Sequencing Project Consortium.

Nat Genet. 2011 Aug 28;43(10):1035-9. doi: 10.1038/ng.919.

PMID:
21873998
15.

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

Berkman PJ, Skarshewski A, Lorenc MT, Lai K, Duran C, Ling EY, Stiller J, Smits L, Imelfort M, Manoli S, McKenzie M, Kubaláková M, Šimková H, Batley J, Fleury D, Doležel J, Edwards D.

Plant Biotechnol J. 2011 Sep;9(7):768-75. doi: 10.1111/j.1467-7652.2010.00587.x. Epub 2011 Feb 28.

16.

Future tools for association mapping in crop plants.

Duran C, Eales D, Marshall D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Appleby N, Batley J, Basford K, Edwards D.

Genome. 2010 Nov;53(11):1017-23. doi: 10.1139/G10-057.

PMID:
21076517
17.

Targeted identification of genomic regions using TAGdb.

Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J, Edwards D.

Plant Methods. 2010 Aug 20;6:19. doi: 10.1186/1746-4811-6-19.

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