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Items: 1 to 20 of 72

1.

Correction: A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase.

Britto-Borges T, Barton GJ.

PLoS One. 2017 Dec 27;12(12):e0190461. doi: 10.1371/journal.pone.0190461. eCollection 2017.

2.

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.

Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW.

Genome Med. 2017 Dec 18;9(1):113. doi: 10.1186/s13073-017-0509-y.

3.

A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase.

Britto-Borges T, Barton GJ.

PLoS One. 2017 Sep 8;12(9):e0184405. doi: 10.1371/journal.pone.0184405. eCollection 2017. Erratum in: PLoS One. 2017 Dec 27;12 (12 ):e0190461.

4.

Improved annotation with de novo transcriptome assembly in four social amoeba species.

Singh R, Lawal HM, Schilde C, Glöckner G, Barton GJ, Schaap P, Cole C.

BMC Genomics. 2017 Jan 31;18(1):120. doi: 10.1186/s12864-017-3505-0.

5.

Adenylate cyclase A acting on PKA mediates induction of stalk formation by cyclic diguanylate at the Dictyostelium organizer.

Chen ZH, Singh R, Cole C, Lawal HM, Schilde C, Febrer M, Barton GJ, Schaap P.

Proc Natl Acad Sci U S A. 2017 Jan 17;114(3):516-521. doi: 10.1073/pnas.1608393114. Epub 2017 Jan 5.

6.

Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Oct;22(10):1641. doi: 10.1261/rna.058339.116. No abstract available.

7.

AlmostSignificant: simplifying quality control of high-throughput sequencing data.

Ward J, Cole C, Febrer M, Barton GJ.

Bioinformatics. 2016 Dec 15;32(24):3850-3851. Epub 2016 Aug 24.

8.

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Jun;22(6):839-51. doi: 10.1261/rna.053959.115. Epub 2016 Mar 28. Erratum in: RNA. 2016 Oct;22(10 ):1641.

9.

Early Intervention during Acute Stone Admissions: Revealing "The Weekend Effect" in Urological Practice.

Blackwell RH, Barton GJ, Kothari AN, Zapf MA, Flanigan RC, Kuo PC, Gupta GN.

J Urol. 2016 Jul;196(1):124-30. doi: 10.1016/j.juro.2016.01.056. Epub 2016 Jan 22.

10.

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Gierliński M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ.

Bioinformatics. 2015 Nov 15;31(22):3625-30. doi: 10.1093/bioinformatics/btv425. Epub 2015 Jul 23.

11.

JPred4: a protein secondary structure prediction server.

Drozdetskiy A, Cole C, Procter J, Barton GJ.

Nucleic Acids Res. 2015 Jul 1;43(W1):W389-94. doi: 10.1093/nar/gkv332. Epub 2015 Apr 16.

12.

Age-Related Deviation of Gait from Normality in Alkaptonuria.

Barton GJ, King SL, Robinson MA, Hawken MB, Ranganath LR.

JIMD Rep. 2015;24:39-44. doi: 10.1007/8904_2015_431. Epub 2015 Mar 19.

13.

14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides.

Madeira F, Tinti M, Murugesan G, Berrett E, Stafford M, Toth R, Cole C, MacKintosh C, Barton GJ.

Bioinformatics. 2015 Jul 15;31(14):2276-83. doi: 10.1093/bioinformatics/btv133. Epub 2015 Mar 3.

14.

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo.

Olivera-Martinez I, Schurch N, Li RA, Song J, Halley PA, Das RM, Burt DW, Barton GJ, Storey KG.

Development. 2014 Aug;141(16):3266-76. doi: 10.1242/dev.112623. Epub 2014 Jul 25.

15.

Primary and submovement control of aiming in C6 tetraplegics following posterior deltoid transfer.

Robinson MA, Elliott D, Hayes SJ, Barton GJ, Bennett SJ.

J Neuroeng Rehabil. 2014 Jul 23;11:112. doi: 10.1186/1743-0003-11-112.

16.

Manipulation of visual biofeedback during gait with a time delayed adaptive Virtual Mirror Box.

Barton GJ, De Asha AR, van Loon EC, Geijtenbeek T, Robinson MA.

J Neuroeng Rehabil. 2014 Jun 10;11:101. doi: 10.1186/1743-0003-11-101.

17.

Elevated O-GlcNAc levels activate epigenetically repressed genes and delay mouse ESC differentiation without affecting naïve to primed cell transition.

Speakman CM, Domke TC, Wongpaiboonwattana W, Sanders K, Mudaliar M, van Aalten DM, Barton GJ, Stavridis MP.

Stem Cells. 2014 Oct;32(10):2605-15. doi: 10.1002/stem.1761.

18.

Filaggrin-stratified transcriptomic analysis of pediatric skin identifies mechanistic pathways in patients with atopic dermatitis.

Cole C, Kroboth K, Schurch NJ, Sandilands A, Sherstnev A, O'Regan GM, Watson RM, McLean WH, Barton GJ, Irvine AD, Brown SJ.

J Allergy Clin Immunol. 2014 Jul;134(1):82-91. doi: 10.1016/j.jaci.2014.04.021. Epub 2014 May 28.

19.

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.

Schurch NJ, Cole C, Sherstnev A, Song J, Duc C, Storey KG, McLean WH, Brown SJ, Simpson GG, Barton GJ.

PLoS One. 2014 Apr 10;9(4):e94270. doi: 10.1371/journal.pone.0094270. eCollection 2014.

20.

Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.

Duc C, Sherstnev A, Cole C, Barton GJ, Simpson GG.

PLoS Genet. 2013 Oct;9(10):e1003867. doi: 10.1371/journal.pgen.1003867. Epub 2013 Oct 31.

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