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Items: 11

1.

Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes.

Chandra S, Terragni J, Zhang G, Pradhan S, Haushka S, Johnston D, Baribault C, Lacey M, Ehrlich M.

Hum Mol Genet. 2015 Aug 15;24(16):4660-73. doi: 10.1093/hmg/ddv198. Epub 2015 Jun 3.

2.

Myogenic differential methylation: diverse associations with chromatin structure.

Chandra S, Baribault C, Lacey M, Ehrlich M.

Biology (Basel). 2014 Jun 19;3(2):426-51. doi: 10.3390/biology3020426.

3.

RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets.

Xu G, Strong MJ, Lacey MR, Baribault C, Flemington EK, Taylor CM.

PLoS One. 2014 Feb 25;9(2):e89445. doi: 10.1371/journal.pone.0089445. eCollection 2014.

4.

DNA methylation and differentiation: HOX genes in muscle cells.

Tsumagari K, Baribault C, Terragni J, Chandra S, Renshaw C, Sun Z, Song L, Crawford GE, Pradhan S, Lacey M, Ehrlich M.

Epigenetics Chromatin. 2013 Aug 2;6(1):25. doi: 10.1186/1756-8935-6-25.

5.

Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity: implications for possible immune adjuvant therapy.

Strong MJ, Xu G, Coco J, Baribault C, Vinay DS, Lacey MR, Strong AL, Lehman TA, Seddon MB, Lin Z, Concha M, Baddoo M, Ferris M, Swan KF, Sullivan DE, Burow ME, Taylor CM, Flemington EK.

PLoS Pathog. 2013;9(5):e1003341. doi: 10.1371/journal.ppat.1003341. Epub 2013 May 9.

6.

Early de novo DNA methylation and prolonged demethylation in the muscle lineage.

Tsumagari K, Baribault C, Terragni J, Varley KE, Gertz J, Pradhan S, Badoo M, Crain CM, Song L, Crawford GE, Myers RM, Lacey M, Ehrlich M.

Epigenetics. 2013 Mar;8(3):317-32. doi: 10.4161/epi.23989. Epub 2013 Feb 15.

7.

Whole-genome sequencing of the Akata and Mutu Epstein-Barr virus strains.

Lin Z, Wang X, Strong MJ, Concha M, Baddoo M, Xu G, Baribault C, Fewell C, Hulme W, Hedges D, Taylor CM, Flemington EK.

J Virol. 2013 Jan;87(2):1172-82. doi: 10.1128/JVI.02517-12. Epub 2012 Nov 14.

8.

Gene expression during normal and FSHD myogenesis.

Tsumagari K, Chang SC, Lacey M, Baribault C, Chittur SV, Sowden J, Tawil R, Crawford GE, Ehrlich M.

BMC Med Genomics. 2011 Sep 27;4:67. doi: 10.1186/1755-8794-4-67.

9.
10.

Duration learning for analysis of nanopore ionic current blockades.

Churbanov A, Baribault C, Winters-Hilt S.

BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S14.

11.

Cheminformatics methods for novel nanopore analysis of HIV DNA termini.

Winters-Hilt S, Landry M, Akeson M, Tanase M, Amin I, Coombs A, Morales E, Millet J, Baribault C, Sendamangalam S.

BMC Bioinformatics. 2006 Sep 6;7 Suppl 2:S22.

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