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Items: 11

1.

Cis-regulatory evolution in prokaryotes revealed by interspecific archaeal hybrids.

Artieri CG, Naor A, Turgeman-Grott I, Zhou Y, York R, Gophna U, Fraser HB.

Sci Rep. 2017 Jun 21;7(1):3986. doi: 10.1038/s41598-017-04278-4.

2.

Dissecting the Genetic Basis of a Complex cis-Regulatory Adaptation.

Naranjo S, Smith JD, Artieri CG, Zhang M, Zhou Y, Palmer ME, Fraser HB.

PLoS Genet. 2015 Dec 29;11(12):e1005751. doi: 10.1371/journal.pgen.1005751. eCollection 2015 Dec.

3.

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation.

Artieri CG, Fraser HB.

Genome Res. 2014 Dec;24(12):2011-21. doi: 10.1101/gr.175893.114. Epub 2014 Oct 7.

4.

Transcript length mediates developmental timing of gene expression across Drosophila.

Artieri CG, Fraser HB.

Mol Biol Evol. 2014 Nov;31(11):2879-89. doi: 10.1093/molbev/msu226. Epub 2014 Jul 28.

5.

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S.

Genome Res. 2014 Jul;24(7):1209-23. doi: 10.1101/gr.159384.113.

6.

Evolution at two levels of gene expression in yeast.

Artieri CG, Fraser HB.

Genome Res. 2014 Mar;24(3):411-21. doi: 10.1101/gr.165522.113. Epub 2013 Dec 6.

7.

Mediation of Drosophila autosomal dosage effects and compensation by network interactions.

Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B.

Genome Biol. 2012 Apr 24;13(4):r28. doi: 10.1186/gb-2012-13-4-r28.

8.

The developmental transcriptome of Drosophila melanogaster.

Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.

Nature. 2011 Mar 24;471(7339):473-9. doi: 10.1038/nature09715. Epub 2010 Dec 22.

10.
11.

Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila.

Haerty W, Jagadeeshan S, Kulathinal RJ, Wong A, Ravi Ram K, Sirot LK, Levesque L, Artieri CG, Wolfner MF, Civetta A, Singh RS.

Genetics. 2007 Nov;177(3):1321-35.

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