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Items: 1 to 20 of 23


Do Bumble Bee, Bombus impatiens, Queens Signal their Reproductive and Mating Status to their Workers?

Amsalem E, Padilla M, Schreiber PM, Altman NS, Hefetz A, Grozinger CM.

J Chem Ecol. 2017 Jun;43(6):563-572. doi: 10.1007/s10886-017-0858-4. Epub 2017 Jun 24.


Novel metrics to measure coverage in whole exome sequencing datasets reveal local and global non-uniformity.

Wang Q, Shashikant CS, Jensen M, Altman NS, Girirajan S.

Sci Rep. 2017 Apr 13;7(1):885. doi: 10.1038/s41598-017-01005-x.


Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.

Yang Z, Zhang Y, Wafula EK, Honaas LA, Ralph PE, Jones S, Clarke CR, Liu S, Su C, Zhang H, Altman NS, Schuster SC, Timko MP, Yoder JI, Westwood JH, dePamphilis CW.

Proc Natl Acad Sci U S A. 2016 Oct 24. pii: 201608765. [Epub ahead of print]


Study Design for Sequencing Studies.

Honaas LA, Altman NS, Krzywinski M.

Methods Mol Biol. 2016;1418:39-66. doi: 10.1007/978-1-4939-3578-9_3.


Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome.

Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Pires JC, Leebens-Mack JH, dePamphilis CW.

PLoS One. 2016 Jan 5;11(1):e0146062. doi: 10.1371/journal.pone.0146062. eCollection 2016.


Intraspecific diversity among partners drives functional variation in coral symbioses.

Parkinson JE, Banaszak AT, Altman NS, LaJeunesse TC, Baums IB.

Sci Rep. 2015 Oct 26;5:15667. doi: 10.1038/srep15667.


Estimating the proportion of true null hypotheses when the statistics are discrete.

Dialsingh I, Austin SR, Altman NS.

Bioinformatics. 2015 Jul 15;31(14):2303-9. doi: 10.1093/bioinformatics/btv104. Epub 2015 Mar 2.


Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty.

Yang Z, Wafula EK, Honaas LA, Zhang H, Das M, Fernandez-Aparicio M, Huang K, Bandaranayake PC, Wu B, Der JP, Clarke CR, Ralph PE, Landherr L, Altman NS, Timko MP, Yoder JI, Westwood JH, dePamphilis CW.

Mol Biol Evol. 2015 Mar;32(3):767-90. doi: 10.1093/molbev/msu343. Epub 2014 Dec 21.


Separate-channel analysis of two-channel microarrays: recovering inter-spot information.

Smyth GK, Altman NS.

BMC Bioinformatics. 2013 May 26;14:165. doi: 10.1186/1471-2105-14-165.


Variation in the transcriptional response of threatened coral larvae to elevated temperatures.

Polato NR, Altman NS, Baums IB.

Mol Ecol. 2013 Mar;22(5):1366-82. doi: 10.1111/mec.12163. Epub 2013 Jan 21.


Functional genomics of a generalist parasitic plant: laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression.

Honaas LA, Wafula EK, Yang Z, Der JP, Wickett NJ, Altman NS, Taylor CG, Yoder JI, Timko MP, Westwood JH, dePamphilis CW.

BMC Plant Biol. 2013 Jan 9;13:9. doi: 10.1186/1471-2229-13-9.


Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower.

Chanderbali AS, Yoo MJ, Zahn LM, Brockington SF, Wall PK, Gitzendanner MA, Albert VA, Leebens-Mack J, Altman NS, Ma H, dePamphilis CW, Soltis DE, Soltis PS.

Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22570-5. doi: 10.1073/pnas.1013395108. Epub 2010 Dec 13.


Evolutionary trends in the floral transcriptome: insights from one of the basalmost angiosperms, the water lily Nuphar advena (Nymphaeaceae).

Yoo MJ, Chanderbali AS, Altman NS, Soltis PS, Soltis DE.

Plant J. 2010 Nov;64(4):687-98. doi: 10.1111/j.1365-313X.2010.04357.x. Epub 2010 Oct 8.


Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies.

Zahn LM, Ma X, Altman NS, Zhang Q, Wall PK, Tian D, Gibas CJ, Gharaibeh R, Leebens-Mack JH, Depamphilis CW, Ma H.

Genome Biol. 2010;11(10):R101. doi: 10.1186/gb-2010-11-10-r101. Epub 2010 Oct 15.


Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing.

Han X, Wu X, Chung WY, Li T, Nekrutenko A, Altman NS, Chen G, Ma H.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12741-6. doi: 10.1073/pnas.0902417106. Epub 2009 Jul 17.


Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae).

Chanderbali AS, Albert VA, Leebens-Mack J, Altman NS, Soltis DE, Soltis PS.

Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8929-34. doi: 10.1073/pnas.0811476106. Epub 2009 May 18.


Comparing quantitative trait Loci and gene expression data.

Han B, Altman NS, Mong JA, Klein LC, Pfaff DW, Vandenbergh DJ.

Adv Bioinformatics. 2008:719818. doi: 10.1155/2008/719818. Epub 2008 Sep 16.


PlantTribes: a gene and gene family resource for comparative genomics in plants.

Wall PK, Leebens-Mack J, Müller KF, Field D, Altman NS, dePamphilis CW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D970-6. Epub 2007 Dec 10.


The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression.

Soltis DE, Ma H, Frohlich MW, Soltis PS, Albert VA, Oppenheimer DG, Altman NS, dePamphilis C, Leebens-Mack J.

Trends Plant Sci. 2007 Aug;12(8):358-67. Epub 2007 Jul 19. Review.


Extending the loop design for two-channel microarray experiments.

Altman NS, Hua J.

Genet Res. 2006 Dec;88(3):153-63.


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