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Use of Dried Blood Spots to Elucidate Full-Length Transmitted/Founder HIV-1 Genomes.

Salazar-Gonzalez JF, Salazar MG, Tully DC, Ogilvie CB, Learn GH, Allen TM, Heath SL, Goepfert P, Bar KJ.

Pathog Immun. 2016 Spring;1(1):129-153.


Elevated Hypothalamic Glucocorticoid Levels Are Associated With Obesity and Hyperphagia in Male Mice.

Sefton C, Harno E, Davies A, Small H, Allen TJ, Wray JR, Lawrence CB, Coll AP, White A.

Endocrinology. 2016 Nov;157(11):4257-4265.


Antiviral CD8+ T Cells Restricted by Human Leukocyte Antigen Class II Exist during Natural HIV Infection and Exhibit Clonal Expansion.

Ranasinghe S, Lamothe PA, Soghoian DZ, Kazer SW, Cole MB, Shalek AK, Yosef N, Jones RB, Donaghey F, Nwonu C, Jani P, Clayton GM, Crawford F, White J, Montoya A, Power K, Allen TM, Streeck H, Kaufmann DE, Picker LJ, Kappler JW, Walker BD.

Immunity. 2016 Oct 18;45(4):917-930. doi: 10.1016/j.immuni.2016.09.015.


Zika: the origin and spread of a mosquito-borne virus.

Kindhauser MK, Allen T, Frank V, Santhana RS, Dye C.

Bull World Health Organ. 2016 Sep 1;94(9):675-686C.


Evaluation and Verification of the Global Rapid Identification of Threats System for Infectious Diseases in Textual Data Sources.

Huff AG, Breit N, Allen T, Whiting K, Kiley C.

Interdiscip Perspect Infect Dis. 2016;2016:5080746.


Association of Age, Systolic Blood Pressure, and Heart Rate with Adult Morbidity and Mortality after Urgent Care Visits.

Hart J, Woodruff M, Joy E, Dalto J, Snow G, Srivastava R, Isaacson B, Allen T.

West J Emerg Med. 2016 Sep;17(5):591-9. doi: 10.5811/westjem.2016.6.30353.


Prospective evaluation of an automated method to identify patients with severe sepsis or septic shock in the emergency department.

Brown SM, Jones J, Kuttler KG, Keddington RK, Allen TL, Haug P.

BMC Emerg Med. 2016 Aug 22;16(1):31. doi: 10.1186/s12873-016-0095-0.


High power visible light emitting diodes as pulsed excitation sources for biomedical photoacoustics.

Allen TJ, Beard PC.

Biomed Opt Express. 2016 Mar 14;7(4):1260-70. doi: 10.1364/BOE.7.001260.


FLIRT-ing with Zika: A Web Application to Predict the Movement of Infected Travelers Validated Against the Current Zika Virus Epidemic.

Huff A, Allen T, Whiting K, Breit N, Arnold B.

PLoS Curr. 2016 Jun 10;8. pii: ecurrents.outbreaks.711379ace737b7c04c89765342a9a8c9. doi: 10.1371/currents.outbreaks.711379ace737b7c04c89765342a9a8c9.


Impact of pre-adapted HIV transmission.

Carlson JM, Du VY, Pfeifer N, Bansal A, Tan VY, Power K, Brumme CJ, Kreimer A, DeZiel CE, Fusi N, Schaefer M, Brockman MA, Gilmour J, Price MA, Kilembe W, Haubrich R, John M, Mallal S, Shapiro R, Frater J, Harrigan PR, Ndung'u T, Allen S, Heckerman D, Sidney J, Allen TM, Goulder PJ, Brumme ZL, Hunter E, Goepfert PA.

Nat Med. 2016 Jun;22(6):606-13. doi: 10.1038/nm.4100.


Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus.

Tully DC, Ogilvie CB, Batorsky RE, Bean DJ, Power KA, Ghebremichael M, Bedard HE, Gladden AD, Seese AM, Amero MA, Lane K, McGrath G, Bazner SB, Tinsley J, Lennon NJ, Henn MR, Brumme ZL, Norris PJ, Rosenberg ES, Mayer KH, Jessen H, Kosakovsky Pond SL, Walker BD, Altfeld M, Carlson JM, Allen TM.

PLoS Pathog. 2016 May 10;12(5):e1005619. doi: 10.1371/journal.ppat.1005619.


Innate immune reconstitution with suppression of HIV-1.

Scully EP, Lockhart A, Garcia-Beltran W, Palmer CD, Musante C, Rosenberg E, Allen TM, Chang JJ, Bosch RJ, Altfeld M.

JCI Insight. 2016 Mar 17;1(3):e85433.


Representing vision and blindness.

Ray PL, Cox AP, Jensen M, Allen T, Duncan W, Diehl AD.

J Biomed Semantics. 2016 Mar 30;7:15. doi: 10.1186/s13326-016-0058-0.


Modeling Sustainable Food Systems.

Allen T, Prosperi P.

Environ Manage. 2016 May;57(5):956-75. doi: 10.1007/s00267-016-0664-8.


Nonspatial Sequence Coding in CA1 Neurons.

Allen TA, Salz DM, McKenzie S, Fortin NJ.

J Neurosci. 2016 Feb 3;36(5):1547-63. doi: 10.1523/JNEUROSCI.2874-15.2016.


Plasma von Willebrand factor level is transiently elevated in a rat model of acute myocardial infarction.

Li Y, Li L, Dong F, Guo L, Hou Y, Hu H, Yan S, Zhou X, Liao L, Allen TD, Liu JU.

Exp Ther Med. 2015 Nov;10(5):1743-1749.


Rapid and Efficient Production of Coronary Artery Ligation and Myocardial Infarction in Mice Using Surgical Clips.

Andrade JN, Tang J, Hensley MT, Vandergriff A, Cores J, Henry E, Allen TA, Caranasos TG, Wang Z, Zhang T, Zhang J, Cheng K.

PLoS One. 2015 Nov 24;10(11):e0143221. doi: 10.1371/journal.pone.0143221.


Distinct Escape Pathway by Hepatitis C Virus Genotype 1a from a Dominant CD8+ T Cell Response by Selection of Altered Epitope Processing.

Walker A, Skibbe K, Steinmann E, Pfaender S, Kuntzen T, Megger DA, Groten S, Sitek B, Lauer GM, Kim AY, Pietschmann T, Allen TM, Timm J.

J Virol. 2015 Oct 7;90(1):33-42. doi: 10.1128/JVI.01993-15.


Fingerspelling as a Novel Gateway into Reading Fluency in Deaf Bilinguals.

Stone A, Kartheiser G, Hauser PC, Petitto LA, Allen TE.

PLoS One. 2015 Oct 1;10(10):e0139610. doi: 10.1371/journal.pone.0139610.


Global biogeography of human infectious diseases.

Murray KA, Preston N, Allen T, Zambrana-Torrelio C, Hosseini PR, Daszak P.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12746-51. doi: 10.1073/pnas.1507442112.

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