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Allosteric communication pathways and thermal rectification in PDZ-2 protein: a computational study.

MiƱo-Galaz GA.

J Phys Chem B. 2015 May 21;119(20):6179-89. doi: 10.1021/acs.jpcb.5b02228. Epub 2015 May 7.


High-resolution restoration of 3D structures from widefield images with extreme low signal-to-noise-ratio.

Arigovindan M, Fung JC, Elnatan D, Mennella V, Chan YH, Pollard M, Branlund E, Sedat JW, Agard DA.

Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17344-9. doi: 10.1073/pnas.1315675110. Epub 2013 Oct 8.


Interferometer-based structured-illumination microscopy utilizing complementary phase relationship through constructive and destructive image detection by two cameras.

Shao L, Winoto L, Agard DA, Gustafsson MG, Sedat JW.

J Microsc. 2012 Jun;246(3):229-36. doi: 10.1111/j.1365-2818.2012.03604.x. Epub 2012 Apr 4.


Effect of depth dependent spherical aberrations in 3D structured illumination microscopy.

Arigovindan M, Sedat JW, Agard DA.

Opt Express. 2012 Mar 12;20(6):6527-41. doi: 10.1364/OE.20.006527.


A distributed multi-GPU system for high speed electron microscopic tomographic reconstruction.

Zheng SQ, Branlund E, Kesthelyi B, Braunfeld MB, Cheng Y, Sedat JW, Agard DA.

Ultramicroscopy. 2011 Jul;111(8):1137-43. doi: 10.1016/j.ultramic.2011.03.015. Epub 2011 Apr 1.


Automated data collection for electron microscopic tomography.

Zheng SQ, Sedat JW, Agard DA.

Methods Enzymol. 2010;481:283-315. doi: 10.1016/S0076-6879(10)81012-2.


Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP- histones.

Matsuda A, Shao L, Boulanger J, Kervrann C, Carlton PM, Kner P, Agard D, Sedat JW.

PLoS One. 2010 Sep 15;5(9):e12768. doi: 10.1371/journal.pone.0012768.


Fast live simultaneous multiwavelength four-dimensional optical microscopy.

Carlton PM, Boulanger J, Kervrann C, Sibarita JB, Salamero J, Gordon-Messer S, Bressan D, Haber JE, Haase S, Shao L, Winoto L, Matsuda A, Kner P, Uzawa S, Gustafsson M, Kam Z, Agard DA, Sedat JW.

Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16016-22. doi: 10.1073/pnas.1004037107. Epub 2010 Aug 12.


A Parallel Product-Convolution approach for representing the depth varying Point Spread Functions in 3D widefield microscopy based on principal component analysis.

Arigovindan M, Shaevitz J, McGowan J, Sedat JW, Agard DA.

Opt Express. 2010 Mar 29;18(7):6461-76. doi: 10.1364/OE.18.006461.


High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (GPUs).

Xu W, Xu F, Jones M, Keszthelyi B, Sedat J, Agard D, Mueller K.

J Struct Biol. 2010 Aug;171(2):142-53. doi: 10.1016/j.jsb.2010.03.018. Epub 2010 Apr 4.


Closed loop adaptive optics for microscopy without a wavefront sensor.

Kner P, Winoto L, Agard DA, Sedat JW.

Proc SPIE Int Soc Opt Eng. 2010 Feb 24;7570. doi: 10.1117/12.840943.


Inflammatory stimuli regulate caspase substrate profiles.

Agard NJ, Maltby D, Wells JA.

Mol Cell Proteomics. 2010 May;9(5):880-93. doi: 10.1074/mcp.M900528-MCP200. Epub 2010 Feb 20.


High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing.

Kner P, Sedat JW, Agard DA, Kam Z.

J Microsc. 2010 Feb;237(2):136-47. doi: 10.1111/j.1365-2818.2009.03315.x.


On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs.

Xu F, Xu W, Jones M, Keszthelyi B, Sedat J, Agard D, Mueller K.

Comput Methods Programs Biomed. 2010 Jun;98(3):261-70. doi: 10.1016/j.cmpb.2009.09.003. Epub 2009 Oct 21.


Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data.

Zheng SQ, Matsuda A, Braunfeld MB, Sedat JW, Agard DA.

J Struct Biol. 2009 Nov;168(2):323-31. doi: 10.1016/j.jsb.2009.06.010. Epub 2009 Jun 21.


Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy.

Schermelleh L, Carlton PM, Haase S, Shao L, Winoto L, Kner P, Burke B, Cardoso MC, Agard DA, Gustafsson MG, Leonhardt H, Sedat JW.

Science. 2008 Jun 6;320(5881):1332-6. doi: 10.1126/science.1156947.


Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination.

Gustafsson MG, Shao L, Carlton PM, Wang CJ, Golubovskaya IN, Cande WZ, Agard DA, Sedat JW.

Biophys J. 2008 Jun;94(12):4957-70. doi: 10.1529/biophysj.107.120345. Epub 2008 Mar 7.


I5S: wide-field light microscopy with 100-nm-scale resolution in three dimensions.

Shao L, Isaac B, Uzawa S, Agard DA, Sedat JW, Gustafsson MG.

Biophys J. 2008 Jun;94(12):4971-83. doi: 10.1529/biophysj.107.120352. Epub 2008 Mar 7.


AIDA: an adaptive image deconvolution algorithm with application to multi-frame and three-dimensional data.

Hom EF, Marchis F, Lee TK, Haase S, Agard DA, Sedat JW.

J Opt Soc Am A Opt Image Sci Vis. 2007 Jun;24(6):1580-600.


Modelling the application of adaptive optics to wide-field microscope live imaging.

Kam Z, Kner P, Agard D, Sedat JW.

J Microsc. 2007 Apr;226(Pt 1):33-42.

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