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Items: 1 to 20 of 69

1.

A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.

Fruzangohar M, Ebrahimie E, Adelson DL.

PLoS One. 2017 Feb 15;12(2):e0170486. doi: 10.1371/journal.pone.0170486.

2.

Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants.

Wang D, Qu Z, Yang L, Zhang Q, Liu ZH, Do T, Adelson DL, Wang ZY, Searle I, Zhu JK.

Plant J. 2017 Jan 20. doi: 10.1111/tpj.13481. [Epub ahead of print]

PMID:
28106309
3.

LINEs between Species: Evolutionary Dynamics of LINE-1 Retrotransposons across the Eukaryotic Tree of Life.

Ivancevic AM, Kortschak RD, Bertozzi T, Adelson DL.

Genome Biol Evol. 2016 Dec 14;8(11):3301-3322.

4.

Identification of candidate anti-cancer molecular mechanisms of Compound Kushen Injection using functional genomics.

Qu Z, Cui J, Harata-Lee Y, Aung TN, Feng Q, Raison JM, Kortschak RD, Adelson DL.

Oncotarget. 2016 Oct 4;7(40):66003-66019. doi: 10.18632/oncotarget.11788.

5.

In depth analysis of the Sox4 gene locus that consists of sense and natural antisense transcripts.

Ling KH, Brautigan PJ, Moore S, Fraser R, Leong MP, Leong JW, Zainal Abidin S, Lee HC, Cheah PS, Raison JM, Babic M, Lee YK, Daish T, Mattiske DM, Mann JR, Adelson DL, Thomas PQ, Hahn CN, Scott HS.

Data Brief. 2016 Feb 17;7:282-90. doi: 10.1016/j.dib.2016.01.045.

6.

Derivation of an endogenous small RNA from double-stranded Sox4 sense and natural antisense transcripts in the mouse brain.

Ling KH, Brautigan PJ, Moore S, Fraser R, Cheah PS, Raison JM, Babic M, Lee YK, Daish T, Mattiske DM, Mann JR, Adelson DL, Thomas PQ, Hahn CN, Scott HS.

Genomics. 2016 Mar;107(2-3):88-99. doi: 10.1016/j.ygeno.2016.01.006.

7.

Correction: HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse.

Lim SL, Qu ZP, Kortschak RD, Lawrence DM, Geoghegan J, Hempfling AL, Bergmann M, Goodnow CC, Ormandy CJ, Wong L, Mann J, Scott HS, Jamsai D, Adelson DL, O'Bryan MK.

PLoS Genet. 2015 Dec 29;11(12):e1005782. doi: 10.1371/journal.pgen.1005782. No abstract available.

8.

HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse.

Lim SL, Qu ZP, Kortschak RD, Lawrence DM, Geoghegan J, Hempfling AL, Bergmann M, Goodnow CC, Ormandy CJ, Wong L, Mann J, Scott HS, Jamsai D, Adelson DL, O'Bryan MK.

PLoS Genet. 2015 Oct 23;11(10):e1005620. doi: 10.1371/journal.pgen.1005620. Erratum in: PLoS Genet. 2015 Dec;11(12):e1005782.

9.

Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics.

Hu Z, Scott HS, Qin G, Zheng G, Chu X, Xie L, Adelson DL, Oftedal BE, Venugopal P, Babic M, Hahn CN, Zhang B, Wang X, Li N, Wei C.

Sci Rep. 2015 Jul 9;5:10940. doi: 10.1038/srep10940.

10.

Correction: Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria.

Fruzangohar M, Ebrahimie E, Ogunniyi AD, Mahdi LK, Paton JC, Adelson DL.

PLoS One. 2015 Apr 17;10(4):e0125537. doi: 10.1371/journal.pone.0125537. No abstract available.

11.

MicroRNAs are part of the regulatory network that controls EGF induced apoptosis, including elements of the JAK/STAT pathway, in A431 cells.

Alanazi I, Hoffmann P, Adelson DL.

PLoS One. 2015 Mar 17;10(3):e0120337. doi: 10.1371/journal.pone.0120337.

12.

Whole-exome sequencing points to considerable genetic heterogeneity of cerebral palsy.

McMichael G, Bainbridge MN, Haan E, Corbett M, Gardner A, Thompson S, van Bon BW, van Eyk CL, Broadbent J, Reynolds C, O'Callaghan ME, Nguyen LS, Adelson DL, Russo R, Jhangiani S, Doddapaneni H, Muzny DM, Gibbs RA, Gecz J, MacLennan AH.

Mol Psychiatry. 2015 Feb;20(2):176-82. doi: 10.1038/mp.2014.189.

PMID:
25666757
13.

Mammalian genome evolution as a result of epigenetic regulation of transposable elements.

Buckley RM, Adelson DL.

Biomol Concepts. 2014 Jun;5(3):183-94. doi: 10.1515/bmc-2014-0013. Review.

PMID:
25372752
14.

Copy number variation in the horse genome.

Ghosh S, Qu Z, Das PJ, Fang E, Juras R, Cothran EG, McDonell S, Kenney DG, Lear TL, Adelson DL, Chowdhary BP, Raudsepp T.

PLoS Genet. 2014 Oct 23;10(10):e1004712. doi: 10.1371/journal.pgen.1004712.

15.

A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease.

Mahdi LK, Deihimi T, Zamansani F, Fruzangohar M, Adelson DL, Paton JC, Ogunniyi AD, Ebrahimie E.

BMC Genomics. 2014 Sep 8;15:769. doi: 10.1186/1471-2164-15-769.

16.

ARMC5 mutations are common in familial bilateral macronodular adrenal hyperplasia.

Gagliardi L, Schreiber AW, Hahn CN, Feng J, Cranston T, Boon H, Hotu C, Oftedal BE, Cutfield R, Adelson DL, Braund WJ, Gordon RD, Rees DA, Grossman AB, Torpy DJ, Scott HS.

J Clin Endocrinol Metab. 2014 Sep;99(9):E1784-92. doi: 10.1210/jc.2014-1265.

PMID:
24905064
17.

The sheep genome illuminates biology of the rumen and lipid metabolism.

Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, Searle SM, Adelson DL, Bian C, Cam GR, Chen Y, Cheng S, DeSilva U, Dixen K, Dong Y, Fan G, Franklin IR, Fu S, Fuentes-Utrilla P, Guan R, Highland MA, Holder ME, Huang G, Ingham AB, Jhangiani SN, Kalra D, Kovar CL, Lee SL, Liu W, Liu X, Lu C, Lv T, Mathew T, McWilliam S, Menzies M, Pan S, Robelin D, Servin B, Townley D, Wang W, Wei B, White SN, Yang X, Ye C, Yue Y, Zeng P, Zhou Q, Hansen JB, Kristiansen K, Gibbs RA, Flicek P, Warkup CC, Jones HE, Oddy VH, Nicholas FW, McEwan JC, Kijas JW, Wang J, Worley KC, Archibald AL, Cockett N, Xu X, Wang W, Dalrymple BP.

Science. 2014 Jun 6;344(6188):1168-73. doi: 10.1126/science.1252806.

18.

Transcription of nuclear organellar DNA in a model plant system.

Wang D, Qu Z, Adelson DL, Zhu JK, Timmis JN.

Genome Biol Evol. 2014 May 27;6(6):1327-34. doi: 10.1093/gbe/evu111.

19.

Understanding the undelaying mechanism of HA-subtyping in the level of physic-chemical characteristics of protein.

Ebrahimi M, Aghagolzadeh P, Shamabadi N, Tahmasebi A, Alsharifi M, Adelson DL, Hemmatzadeh F, Ebrahimie E.

PLoS One. 2014 May 8;9(5):e96984. doi: 10.1371/journal.pone.0096984. Erratum in: PLoS One. 2014;9(6):e99921.

20.

Discovery of a novel long terminal repeat (LTR2i_SS) in Sus Scrofa.

Lim SL, Kortschak RD, Adelson DL.

Anim Genet. 2014 Jun;45(3):367-72. doi: 10.1111/age.12138.

PMID:
24617963
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