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Items: 15

1.

Impacts of the overexpression of a tomato translationally controlled tumor protein (TCTP) in tobacco revealed by phenotypic and transcriptomic analysis.

de Carvalho M, Acencio ML, Laitz AV, de Araújo LM, de Lara Campos Arcuri M, do Nascimento LC, Maia IG.

Plant Cell Rep. 2017 Mar 4. doi: 10.1007/s00299-017-2117-0. [Epub ahead of print]

PMID:
28260122
3.

An ensemble framework for identifying essential proteins.

Zhang X, Xiao W, Acencio ML, Lemke N, Wang X.

BMC Bioinformatics. 2016 Aug 25;17:322. doi: 10.1186/s12859-016-1166-7.

4.

Predicting Essential Genes and Proteins Based on Machine Learning and Network Topological Features: A Comprehensive Review.

Zhang X, Acencio ML, Lemke N.

Front Physiol. 2016 Mar 8;7:75. doi: 10.3389/fphys.2016.00075. Review. Erratum in: Front Physiol. 2016 Dec 06;7:617.

5.

Prediction of Druggable Proteins Using Machine Learning and Systems Biology: A Mini-Review.

Kandoi G, Acencio ML, Lemke N.

Front Physiol. 2015 Dec 8;6:366. doi: 10.3389/fphys.2015.00366. Review.

6.

Transcriptome response signatures associated with the overexpression of a mitochondrial uncoupling protein (AtUCP1) in tobacco.

Laitz AV, Acencio ML, Budzinski IG, Labate MT, Lemke N, Ribolla PE, Maia IG.

PLoS One. 2015 Jun 24;10(6):e0130744. doi: 10.1371/journal.pone.0130744.

7.

Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based proteomics.

Pollo-Oliveira L, Post H, Acencio ML, Lemke N, van den Toorn H, Tragante V, Heck AJ, Altelaar AF, Yatsuda AP.

Parasit Vectors. 2013 Nov 23;6(1):335. doi: 10.1186/1756-3305-6-335.

8.

Prediction of oncogenic interactions and cancer-related signaling networks based on network topology.

Acencio ML, Bovolenta LA, Camilo E, Lemke N.

PLoS One. 2013 Oct 25;8(10):e77521. doi: 10.1371/journal.pone.0077521.

9.

GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks.

Camilo E, Bovolenta LA, Acencio ML, Rybarczyk-Filho JL, Castro MA, Moreira JC, Lemke N.

Bioinformatics. 2013 Oct 1;29(19):2505-6. doi: 10.1093/bioinformatics/btt377.

PMID:
23894138
10.

The development of a universal in silico predictor of protein-protein interactions.

Valente GT, Acencio ML, Martins C, Lemke N.

PLoS One. 2013 May 31;8(5):e65587. doi: 10.1371/journal.pone.0065587.

11.

Cooperative RNA polymerase molecules behavior on a stochastic sequence-dependent model for transcription elongation.

Costa PR, Acencio ML, Lemke N.

PLoS One. 2013;8(2):e57328. doi: 10.1371/journal.pone.0057328.

12.

HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions.

Bovolenta LA, Acencio ML, Lemke N.

BMC Genomics. 2012 Aug 17;13:405. doi: 10.1186/1471-2164-13-405.

13.

A machine learning approach for genome-wide prediction of morbid and druggable human genes based on systems-level data.

Costa PR, Acencio ML, Lemke N.

BMC Genomics. 2010 Dec 22;11 Suppl 5:S9. doi: 10.1186/1471-2164-11-S5-S9.

14.
15.

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.

Brentani H, Caballero OL, Camargo AA, da Silva AM, da Silva WA Jr, Dias Neto E, Grivet M, Gruber A, Guimaraes PE, Hide W, Iseli C, Jongeneel CV, Kelso J, Nagai MA, Ojopi EP, Osorio EC, Reis EM, Riggins GJ, Simpson AJ, de Souza S, Stevenson BJ, Strausberg RL, Tajara EH, Verjovski-Almeida S, Acencio ML, Bengtson MH, Bettoni F, Bodmer WF, Briones MR, Camargo LP, Cavenee W, Cerutti JM, Coelho Andrade LE, Costa dos Santos PC, Ramos Costa MC, da Silva IT, Estécio MR, Sa Ferreira K, Furnari FB, Faria M Jr, Galante PA, Guimaraes GS, Holanda AJ, Kimura ET, Leerkes MR, Lu X, Maciel RM, Martins EA, Massirer KB, Melo AS, Mestriner CA, Miracca EC, Miranda LL, Nobrega FG, Oliveira PS, Paquola AC, Pandolfi JR, Campos Pardini MI, Passetti F, Quackenbush J, Schnabel B, Sogayar MC, Souza JE, Valentini SR, Zaiats AC, Amaral EJ, Arnaldi LA, de Araújo AG, de Bessa SA, Bicknell DC, Ribeiro de Camaro ME, Carraro DM, Carrer H, Carvalho AF, Colin C, Costa F, Curcio C, Guerreiro da Silva ID, Pereira da Silva N, Dellamano M, El-Dorry H, Espreafico EM, Scattone Ferreira AJ, Ayres Ferreira C, Fortes MA, Gama AH, Giannella-Neto D, Giannella ML, Giorgi RR, Goldman GH, Goldman MH, Hackel C, Ho PL, Kimura EM, Kowalski LP, Krieger JE, Leite LC, Lopes A, Luna AM, Mackay A, Mari SK, Marques AA, Martins WK, Montagnini A, Mourão Neto M, Nascimento AL, Neville AM, Nobrega MP, O'Hare MJ, Otsuka AY, Ruas de Melo AI, Paco-Larson ML, Guimarães Pereira G, Pereira da Silva N, Pesquero JB, Pessoa JG, Rahal P, Rainho CA, Rodrigues V, Rogatto SR, Romano CM, Romeiro JG, Rossi BM, Rusticci M, Guerra de Sá R, Sant' Anna SC, Sarmazo ML, Silva TC, Soares FA, Sonati Mde F, de Freitas Sousa J, Queiroz D, Valente V, Vettore AL, Villanova FE, Zago MA, Zalcberg H; Human Cancer Genome Project/Cancer Genome Anatomy Project Annotation Consortium.; Human Cancer Genome Project Sequencing Consortium..

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13418-23.

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