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Items: 11

1.

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.

Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Albà MM, Gabaldón T, Alioto T, Godoy JA.

Genome Biol. 2016 Dec 14;17(1):251.

2.

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.

Abascal F, Ezkurdia I, Rodriguez-Rivas J, Rodriguez JM, del Pozo A, Vázquez J, Valencia A, Tress ML.

PLoS Comput Biol. 2015 Jun 10;11(6):e1004325. doi: 10.1371/journal.pcbi.1004325. eCollection 2015 Jun.

3.

The evolutionary fate of alternatively spliced homologous exons after gene duplication.

Abascal F, Tress ML, Valencia A.

Genome Biol Evol. 2015 Apr 29;7(6):1392-403. doi: 10.1093/gbe/evv076.

4.

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals.

Abascal F, Tress ML, Valencia A.

Bioinformatics. 2015 Jul 15;31(14):2257-61. doi: 10.1093/bioinformatics/btv132. Epub 2015 Mar 2.

5.

Spawning behaviour and post-spawning migration patterns of atlantic bluefin tuna (Thunnus thynnus) ascertained from satellite archival tags.

Aranda G, Abascal FJ, Varela JL, Medina A.

PLoS One. 2013 Oct 1;8(10):e76445. doi: 10.1371/journal.pone.0076445. eCollection 2013.

6.

The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates.

Irisarri I, San Mauro D, Abascal F, Ohler A, Vences M, Zardoya R.

BMC Genomics. 2012 Nov 15;13:626. doi: 10.1186/1471-2164-13-626.

7.

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.

Abascal F, Zardoya R, Telford MJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13. doi: 10.1093/nar/gkq291. Epub 2010 Apr 30.

8.

CentrosomeDB: a human centrosomal proteins database.

Nogales-Cadenas R, Abascal F, Díez-Pérez J, Carazo JM, Pascual-Montano A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D175-80. doi: 10.1093/nar/gkn815. Epub 2008 Oct 29.

9.

GenDecoder: genetic code prediction for metazoan mitochondria.

Abascal F, Zardoya R, Posada D.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W389-93.

10.

Parallel evolution of the genetic code in arthropod mitochondrial genomes.

Abascal F, Posada D, Knight RD, Zardoya R.

PLoS Biol. 2006 May;4(5):e127. Epub 2006 Apr 25.

11.

Reductive genome evolution in Buchnera aphidicola.

van Ham RC, Kamerbeek J, Palacios C, Rausell C, Abascal F, Bastolla U, Fernández JM, Jiménez L, Postigo M, Silva FJ, Tamames J, Viguera E, Latorre A, Valencia A, Morán F, Moya A.

Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):581-6. Epub 2003 Jan 9.

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