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Bioinformatics. 2019 Dec 15;35(24):5334-5336. doi: 10.1093/bioinformatics/btz553.

VeriNA3d: an R package for nucleic acids data mining.

Author information

1
Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology.
2
Department of Biochemistry and Biomedicine, Faculty of Biology, University of Barcelona, Barcelona, Spain.
3
Functional Genomics Laboratory and Biomolecular Simulations Laboratory, Institute Pasteur of Montevideo, Montevideo, Uruguay.

Abstract

SUMMARY:

veriNA3d is an R package for the analysis of nucleic acids structural data, with an emphasis in complex RNA structures. In addition to single-structure analyses, veriNA3d also implements functions to handle whole datasets of mmCIF/PDB structures that could be retrieved from public/local repositories. Our package aims to fill a gap in the data mining of nucleic acids structures to produce flexible and high throughput analysis of structural databases.

AVAILABILITY AND IMPLEMENTATION:

http://mmb.irbbarcelona.org/gitlab/dgallego/veriNA3d.

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

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