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Elife. 2014 Oct 13;3. doi: 10.7554/eLife.04126.

Ancestral resurrection reveals evolutionary mechanisms of kinase plasticity.

Author information

1
Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
2
Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.
3
Department of Pharmacology, Yale University School of Medicine, New Haven, United States.

Abstract

Protein kinases have evolved diverse specificities to enable cellular information processing. To gain insight into the mechanisms underlying kinase diversification, we studied the CMGC protein kinases using ancestral reconstruction. Within this group, the cyclin dependent kinases (CDKs) and mitogen activated protein kinases (MAPKs) require proline at the +1 position of their substrates, while Ime2 prefers arginine. The resurrected common ancestor of CDKs, MAPKs, and Ime2 could phosphorylate substrates with +1 proline or arginine, with preference for proline. This specificity changed to a strong preference for +1 arginine in the lineage leading to Ime2 via an intermediate with equal specificity for proline and arginine. Mutant analysis revealed that a variable residue within the kinase catalytic cleft, DFGx, modulates +1 specificity. Expansion of Ime2 kinase specificity by mutation of this residue did not cause dominant deleterious effects in vivo. Tolerance of cells to new specificities likely enabled the evolutionary divergence of kinases.

KEYWORDS:

Ime2; S. cerevisiae; ancestral reconstruction; biochemistry; cyclin-dependent kinase; evolution; evolutionary biology; genomics; human; mouse; neurospora; phosphoregulatory networks; protein kinase

PMID:
25310241
PMCID:
PMC4228266
DOI:
10.7554/eLife.04126
[Indexed for MEDLINE]
Free PMC Article

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