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Nucleic Acids Res. 2007 Jul;35(Web Server issue):W325-9. Epub 2007 May 8.

taveRNA: a web suite for RNA algorithms and applications.

Author information

1
Lab for Computational Biology, SFU, Canada.

Abstract

We present taveRNA, a web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is a new alternative for RNA secondary structure prediction. It is based on a dynamic programming solution that minimizes the sum of energy density and free energy of an RNA structure. inteRNA is the first RNA-RNA interaction structure prediction web service. It also employs a dynamic programming algorithm to minimize the free energy of the resulting joint structure of the two interacting RNAs. Lastly, pRuNA is an efficient database pruning service; which given a query RNA, eliminates a significant portion of an ncRNA database and returns only a few ncRNAs as potential regulators. taveRNA is available at http://compbio.cs.sfu.ca/taverna.

PMID:
17488837
PMCID:
PMC1933159
DOI:
10.1093/nar/gkm303
[Indexed for MEDLINE]
Free PMC Article

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