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Items: 1 to 20 of 33

1.

Reverse Engineering Human Brain Evolution Using Organoid Models.

Mostajo-Radji MA, Schmitz MT, Montoya ST, Pollen AA.

Brain Res. 2019 Dec 3:146582. doi: 10.1016/j.brainres.2019.146582. [Epub ahead of print] Review.

PMID:
31809699
2.

Human-specific tandem repeat expansion and differential gene expression during primate evolution.

Sulovari A, Li R, Audano PA, Porubsky D, Vollger MR, Logsdon GA; Human Genome Structural Variation Consortium, Warren WC, Pollen AA, Chaisson MJP, Eichler EE.

Proc Natl Acad Sci U S A. 2019 Nov 12;116(46):23243-23253. doi: 10.1073/pnas.1912175116. Epub 2019 Oct 28.

PMID:
31659027
3.

Getting to the heart of cardiovascular evolution in humans.

Pollen A, Pavlovic BJ.

Elife. 2019 May 28;8. pii: e47807. doi: 10.7554/eLife.47807.

4.

Paired involvement of human-specific Olduvai domains and NOTCH2NL genes in human brain evolution.

Fiddes IT, Pollen AA, Davis JM, Sikela JM.

Hum Genet. 2019 Jul;138(7):715-721. doi: 10.1007/s00439-019-02018-4. Epub 2019 May 13.

5.

Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex.

Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, Leyrat A, West JAA, Panagiotakos G, Alvarez-Buylla A, Paredes MF, Nowakowski TJ, Pollen AA, Kriegstein AR.

Neuron. 2019 Apr 3;102(1):143-158.e7. doi: 10.1016/j.neuron.2019.01.027. Epub 2019 Feb 12.

PMID:
30770253
6.

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.

Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, Bershteyn M, Lowe CB, Pavlovic BJ, Salama SR, Haussler D, Eichler EE, Kriegstein AR.

Cell. 2019 Feb 7;176(4):743-756.e17. doi: 10.1016/j.cell.2019.01.017.

PMID:
30735633
7.

Physiological Models of Human Neuronal Development and Disease.

Mostajo-Radji MA, Pollen AA.

Neuron. 2018 Dec 5;100(5):1025-1027. doi: 10.1016/j.neuron.2018.11.026.

8.

Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development.

Nowakowski TJ, Rani N, Golkaram M, Zhou HR, Alvarado B, Huch K, West JA, Leyrat A, Pollen AA, Kriegstein AR, Petzold LR, Kosik KS.

Nat Neurosci. 2018 Dec;21(12):1784-1792. doi: 10.1038/s41593-018-0265-3. Epub 2018 Nov 19.

9.

Identification of cell types in a mouse brain single-cell atlas using low sampling coverage.

Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR.

BMC Biol. 2018 Oct 11;16(1):113. doi: 10.1186/s12915-018-0580-x.

10.

Transcriptional fates of human-specific segmental duplications in brain.

Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE.

Genome Res. 2018 Oct;28(10):1566-1576. doi: 10.1101/gr.237610.118. Epub 2018 Sep 18.

11.

Postmitotic Fate Refinement in the Subplate.

Mostajo-Radji MA, Pollen AA.

Cell Stem Cell. 2018 Jul 5;23(1):7-9. doi: 10.1016/j.stem.2018.06.017.

12.

High-resolution comparative analysis of great ape genomes.

Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, Hoekzema K, Qiu R, Clark K, Raja A, Welch AE, Sorensen M, Baker C, Fulton RS, Armstrong J, Graves-Lindsay TA, Denli AM, Hoppe ER, Hsieh P, Hill CM, Pang AWC, Lee J, Lam ET, Dutcher SK, Gage FH, Warren WC, Shendure J, Haussler D, Schneider VA, Cao H, Ventura M, Wilson RK, Paten B, Pollen A, Eichler EE.

Science. 2018 Jun 8;360(6393). pii: eaar6343. doi: 10.1126/science.aar6343.

13.

Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.

Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, Nowakowski TJ, Pollen AA, Dougherty ML, Nuttle X, Addor MC, Zwolinski S, Katzman S, Kriegstein A, Eichler EE, Salama SR, Jacobs FMJ, Haussler D.

Cell. 2018 May 31;173(6):1356-1369.e22. doi: 10.1016/j.cell.2018.03.051. Epub 2018 May 31.

14.

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.

Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR.

Science. 2017 Dec 8;358(6368):1318-1323. doi: 10.1126/science.aap8809.

15.

Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia.

Bershteyn M, Nowakowski TJ, Pollen AA, Di Lullo E, Nene A, Wynshaw-Boris A, Kriegstein AR.

Cell Stem Cell. 2017 Apr 6;20(4):435-449.e4. doi: 10.1016/j.stem.2016.12.007. Epub 2017 Jan 19.

16.

Zika virus cell tropism in the developing human brain and inhibition by azithromycin.

Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14408-14413. Epub 2016 Nov 29.

17.

Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas.

Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A.

Mol Syst Biol. 2016 Nov 25;12(11):889. doi: 10.15252/msb.20166969.

18.

Primate Neurons Flex Their Musclin.

Pollen AA, Kriegstein AR.

Neuron. 2016 Nov 23;92(4):681-683. doi: 10.1016/j.neuron.2016.11.024.

19.

Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development.

Nowakowski TJ, Pollen AA, Sandoval-Espinosa C, Kriegstein AR.

Neuron. 2016 Sep 21;91(6):1219-1227. doi: 10.1016/j.neuron.2016.09.005.

20.

SCell: integrated analysis of single-cell RNA-seq data.

Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A.

Bioinformatics. 2016 Jul 15;32(14):2219-20. doi: 10.1093/bioinformatics/btw201. Epub 2016 Apr 19.

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