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Items: 1 to 20 of 104

1.

Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences.

Deutekom ES, Vosseberg J, van Dam TJP, Snel B.

PLoS Comput Biol. 2019 Aug 28;15(8):e1007301. doi: 10.1371/journal.pcbi.1007301. eCollection 2019 Aug.

2.

Mosaic origin of the eukaryotic kinetochore.

Tromer EC, van Hooff JJE, Kops GJPL, Snel B.

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):12873-12882. doi: 10.1073/pnas.1821945116. Epub 2019 May 24.

3.

Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID.

Antonova SV, Boeren J, Timmers HTM, Snel B.

Genes Dev. 2019 Aug 1;33(15-16):888-902. doi: 10.1101/gad.300475.117. Epub 2019 May 23.

PMID:
31123066
4.

The molecular basis of monopolin recruitment to the kinetochore.

Plowman R, Singh N, Tromer EC, Payan A, Duro E, Spanos C, Rappsilber J, Snel B, Kops GJPL, Corbett KD, Marston AL.

Chromosoma. 2019 Sep;128(3):331-354. doi: 10.1007/s00412-019-00700-0. Epub 2019 Apr 30.

5.

Inferring the Evolutionary History of Your Favorite Protein: A Guide for Molecular Biologists.

van Hooff JJE, Tromer E, van Dam TJP, Kops GJPL, Snel B.

Bioessays. 2019 May;41(5):e1900006. doi: 10.1002/bies.201900006.

PMID:
31026339
6.

Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in Arabidopsis thaliana.

van der Horst S, Snel B, Hanson J, Smeekens S.

RNA. 2019 Mar;25(3):292-304. doi: 10.1261/rna.067983.118. Epub 2018 Dec 19.

7.

The Arabidopsis bZIP transcription factor family-an update.

Dröge-Laser W, Snoek BL, Snel B, Weiste C.

Curr Opin Plant Biol. 2018 Oct;45(Pt A):36-49. doi: 10.1016/j.pbi.2018.05.001. Epub 2018 Jun 1. Review.

PMID:
29860175
8.

Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery.

Vosseberg J, Snel B.

Biol Direct. 2017 Dec 1;12(1):30. doi: 10.1186/s13062-017-0201-6. Review.

9.

Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics.

van Hooff JJ, Tromer E, van Wijk LM, Snel B, Kops GJ.

EMBO Rep. 2017 Sep;18(9):1559-1571. doi: 10.15252/embr.201744102. Epub 2017 Jun 22.

10.
11.

Phylogenomics-guided discovery of a novel conserved cassette of short linear motifs in BubR1 essential for the spindle checkpoint.

Tromer E, Bade D, Snel B, Kops GJ.

Open Biol. 2016 Dec;6(12). pii: 160315. doi: 10.1098/rsob.160315.

12.

Extensive translational regulation during seed germination revealed by polysomal profiling.

Bai B, Peviani A, van der Horst S, Gamm M, Snel B, Bentsink L, Hanson J.

New Phytol. 2017 Apr;214(1):233-244. doi: 10.1111/nph.14355. Epub 2016 Dec 9.

13.

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.

Santuari L, Sanchez-Perez GF, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novak O, Ljung K, van Heesch S, de Bruijn E, Cuppen E, Willemsen V, Mähönen AP, Lukowitz W, Snel B, de Ridder D, Scheres B, Heidstra R.

Plant Cell. 2016 Dec;28(12):2937-2951. doi: 10.1105/tpc.16.00656. Epub 2016 Dec 5.

14.
15.

A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions.

Sameith K, Amini S, Groot Koerkamp MJ, van Leenen D, Brok M, Brabers N, Lijnzaad P, van Hooff SR, Benschop JJ, Lenstra TL, Apweiler E, van Wageningen S, Snel B, Holstege FC, Kemmeren P.

BMC Biol. 2015 Dec 23;13:112. doi: 10.1186/s12915-015-0222-5.

16.

Widespread Recurrent Patterns of Rapid Repeat Evolution in the Kinetochore Scaffold KNL1.

Tromer E, Snel B, Kops GJ.

Genome Biol Evol. 2015 Aug 8;7(8):2383-93. doi: 10.1093/gbe/evv140.

17.

Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution.

Peng M, Aye TT, Snel B, van Breukelen B, Scholten A, Heck AJ.

J Proteome Res. 2015 Jul 2;14(7):2976-87. doi: 10.1021/acs.jproteome.5b00370. Epub 2015 Jun 24.

PMID:
26066639
18.

Genesis of chromatin and transcription dynamics in the origin of species.

Koster MJ, Snel B, Timmers HT.

Cell. 2015 May 7;161(4):724-36. doi: 10.1016/j.cell.2015.04.033. Review.

19.
20.

Increased sucrose levels mediate selective mRNA translation in Arabidopsis.

Gamm M, Peviani A, Honsel A, Snel B, Smeekens S, Hanson J.

BMC Plant Biol. 2014 Nov 18;14:306. doi: 10.1186/s12870-014-0306-3.

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