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Items: 17

1.

A Darwinian Uncertainty Principle.

Gascuel O, Steel M.

Syst Biol. 2019 Aug 20. pii: syz054. doi: 10.1093/sysbio/syz054. [Epub ahead of print]

PMID:
31432087
2.

PastView: a user-friendly interface to explore ancestral scenarios.

Chevenet F, Castel G, Jousselin E, Gascuel O.

BMC Evol Biol. 2019 Aug 2;19(1):163. doi: 10.1186/s12862-019-1490-4.

3.

A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios.

Ishikawa SA, Zhukova A, Iwasaki W, Gascuel O.

Mol Biol Evol. 2019 Sep 1;36(9):2069-2085. doi: 10.1093/molbev/msz131.

4.

Distribution and asymptotic behavior of the phylogenetic transfer distance.

Dávila Felipe M, Domelevo Entfellner JB, Lemoine F, Truszkowski J, Gascuel O.

J Math Biol. 2019 Jul;79(2):485-508. doi: 10.1007/s00285-019-01365-0. Epub 2019 Apr 29.

5.

NGPhylogeny.fr: new generation phylogenetic services for non-specialists.

Lemoine F, Correia D, Lefort V, Doppelt-Azeroual O, Mareuil F, Cohen-Boulakia S, Gascuel O.

Nucleic Acids Res. 2019 Jul 2;47(W1):W260-W265. doi: 10.1093/nar/gkz303.

6.

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.

Chang JM, Floden EW, Herrero J, Gascuel O, Di Tommaso P, Notredame C.

Bioinformatics. 2019 Feb 6. doi: 10.1093/bioinformatics/btz082. [Epub ahead of print]

PMID:
30726875
7.

Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty.

Chatzou M, Floden EW, Di Tommaso P, Gascuel O, Notredame C.

Syst Biol. 2018 Nov 1;67(6):997-1009. doi: 10.1093/sysbio/syx096.

PMID:
30295908
8.

Improving pairwise comparison of protein sequences with domain co-occurrence.

Menichelli C, Gascuel O, Bréhélin L.

PLoS Comput Biol. 2018 Jan 2;14(1):e1005889. doi: 10.1371/journal.pcbi.1005889. eCollection 2018 Jan.

9.

The Role of Phylogenetics as a Tool to Predict the Spread of Resistance.

Zhukova A, Cutino-Moguel T, Gascuel O, Pillay D.

J Infect Dis. 2017 Dec 1;216(suppl_9):S820-S823. doi: 10.1093/infdis/jix411. Review.

10.

[The tenth gene of HIV].

Cassan É, Arigon-Chifolleau AM, Mesnard JM, Gros A, Gascuel O.

Med Sci (Paris). 2017 May;33(5):484-485. doi: 10.1051/medsci/20173305008. Epub 2017 Jun 14. French. No abstract available.

11.

SMS: Smart Model Selection in PhyML.

Lefort V, Longueville JE, Gascuel O.

Mol Biol Evol. 2017 Sep 1;34(9):2422-2424. doi: 10.1093/molbev/msx149.

12.

Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study.

Saulnier E, Gascuel O, Alizon S.

PLoS Comput Biol. 2017 Mar 6;13(3):e1005416. doi: 10.1371/journal.pcbi.1005416. eCollection 2017 Mar.

13.

Special Issue: Mathematical and Computational Evolutionary Biology-2015.

Bryant D, Gascuel O.

Syst Biol. 2017 Jan 1;66(1):1-2. doi: 10.1093/sysbio/syw111. No abstract available.

14.

In-depth analysis of HIV-1 drug resistance mutations in HIV-infected individuals failing first-line regimens in West and Central Africa.

Villabona-Arenas CJ, Vidal N, Guichet E, Serrano L, Delaporte E, Gascuel O, Peeters M.

AIDS. 2016 Nov 13;30(17):2577-2589.

PMID:
27603287
15.

The combinatorics of overlapping genes.

Lèbre S, Gascuel O.

J Theor Biol. 2017 Feb 21;415:90-101. doi: 10.1016/j.jtbi.2016.09.018. Epub 2016 Oct 11.

PMID:
27737786
16.

Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic.

Cassan E, Arigon-Chifolleau AM, Mesnard JM, Gross A, Gascuel O.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11537-11542. Epub 2016 Sep 28.

17.

Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection.

Ghouila A, Florent I, Guerfali FZ, Terrapon N, Laouini D, Yahia SB, Gascuel O, Bréhélin L.

PLoS One. 2014 Jun 5;9(6):e95275. doi: 10.1371/journal.pone.0095275. eCollection 2014.

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