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Items: 18

1.

Rapid in vitro production of single-stranded DNA.

Minev D, Guerra R, Kishi JY, Smith C, Krieg E, Said K, Hornick A, Sasaki HM, Filsinger G, Beliveau BJ, Yin P, Church GM, Shih WM.

Nucleic Acids Res. 2019 Dec 16;47(22):11956-11962. doi: 10.1093/nar/gkz998.

PMID:
31713635
2.

Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues.

Saka SK, Wang Y, Kishi JY, Zhu A, Zeng Y, Xie W, Kirli K, Yapp C, Cicconet M, Beliveau BJ, Lapan SW, Yin S, Lin M, Boyden ES, Kaeser PS, Pihan G, Church GM, Yin P.

Nat Biotechnol. 2019 Sep;37(9):1080-1090. doi: 10.1038/s41587-019-0207-y. Epub 2019 Aug 19.

PMID:
31427819
3.

SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues.

Kishi JY, Lapan SW, Beliveau BJ, West ER, Zhu A, Sasaki HM, Saka SK, Wang Y, Cepko CL, Yin P.

Nat Methods. 2019 Jun;16(6):533-544. doi: 10.1038/s41592-019-0404-0. Epub 2019 May 20.

4.

Islands of retroelements are major components of Drosophila centromeres.

Chang CH, Chavan A, Palladino J, Wei X, Martins NMC, Santinello B, Chen CC, Erceg J, Beliveau BJ, Wu CT, Larracuente AM, Mellone BG.

PLoS Biol. 2019 May 14;17(5):e3000241. doi: 10.1371/journal.pbio.3000241. eCollection 2019 May.

5.

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.

Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT.

PLoS Genet. 2018 Dec 26;14(12):e1007872. doi: 10.1371/journal.pgen.1007872. eCollection 2018 Dec.

6.

OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.

Beliveau BJ, Kishi JY, Nir G, Sasaki HM, Saka SK, Nguyen SC, Wu CT, Yin P.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2183-E2192. doi: 10.1073/pnas.1714530115. Epub 2018 Feb 20.

7.

Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT.

Schueder F, Lara-Gutiérrez J, Beliveau BJ, Saka SK, Sasaki HM, Woehrstein JB, Strauss MT, Grabmayr H, Yin P, Jungmann R.

Nat Commun. 2017 Dec 12;8(1):2090. doi: 10.1038/s41467-017-02028-8.

8.

In Situ Super-Resolution Imaging of Genomic DNA with OligoSTORM and OligoDNA-PAINT.

Beliveau BJ, Boettiger AN, Nir G, Bintu B, Yin P, Zhuang X, Wu CT.

Methods Mol Biol. 2017;1663:231-252. doi: 10.1007/978-1-4939-7265-4_19.

9.

Spatial organization of chromatin domains and compartments in single chromosomes.

Wang S, Su JH, Beliveau BJ, Bintu B, Moffitt JR, Wu CT, Zhuang X.

Science. 2016 Aug 5;353(6299):598-602. doi: 10.1126/science.aaf8084. Epub 2016 Jul 21.

10.

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.

Boettiger AN, Bintu B, Moffitt JR, Wang S, Beliveau BJ, Fudenberg G, Imakaev M, Mirny LA, Wu CT, Zhuang X.

Nature. 2016 Jan 21;529(7586):418-22. doi: 10.1038/nature16496. Epub 2016 Jan 13.

11.

Scalable amplification of strand subsets from chip-synthesized oligonucleotide libraries.

Schmidt TL, Beliveau BJ, Uca YO, Theilmann M, Da Cruz F, Wu CT, Shih WM.

Nat Commun. 2015 Nov 16;6:8634. doi: 10.1038/ncomms9634.

12.

Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes.

Beliveau BJ, Boettiger AN, Avendaño MS, Jungmann R, McCole RB, Joyce EF, Kim-Kiselak C, Bantignies F, Fonseka CY, Erceg J, Hannan MA, Hoang HG, Colognori D, Lee JT, Shih WM, Yin P, Zhuang X, Wu CT.

Nat Commun. 2015 May 12;6:7147. doi: 10.1038/ncomms8147.

13.

Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome.

Pinter SF, Colognori D, Beliveau BJ, Sadreyev RI, Payer B, Yildirim E, Wu CT, Lee JT.

Genetics. 2015 Jun;200(2):537-49. doi: 10.1534/genetics.115.176263. Epub 2015 Apr 9.

14.

Avoiding the ends: internal epitope tagging of proteins using transposon Tn7.

Zordan RE, Beliveau BJ, Trow JA, Craig NL, Cormack BP.

Genetics. 2015 May;200(1):47-58. doi: 10.1534/genetics.114.169482. Epub 2015 Mar 5.

15.

Visualizing genomes with Oligopaint FISH probes.

Beliveau BJ, Apostolopoulos N, Wu CT.

Curr Protoc Mol Biol. 2014 Jan 6;105:Unit 14.23.. doi: 10.1002/0471142727.mb1423s105.

16.

Germline progenitors escape the widespread phenomenon of homolog pairing during Drosophila development.

Joyce EF, Apostolopoulos N, Beliveau BJ, Wu CT.

PLoS Genet. 2013;9(12):e1004013. doi: 10.1371/journal.pgen.1004013. Epub 2013 Dec 19.

17.

Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries.

Murgha Y, Beliveau B, Semrau K, Schwartz D, Wu CT, Gulari E, Rouillard JM.

Biotechniques. 2015 Jun 1;58(6):301-7. doi: 10.2144/000114298. eCollection 2015 Jun.

18.

Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.

Beliveau BJ, Joyce EF, Apostolopoulos N, Yilmaz F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard JM, Wu CT.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21301-6. doi: 10.1073/pnas.1213818110. Epub 2012 Dec 11.

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