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Items: 1 to 20 of 74

1.

Multiplex Droplet Digital PCR Protocols for Quantification of GM Maize Events.

Dobnik D, Spilsberg B, Bogožalec Košir A, Štebih D, Morisset D, Holst-Jensen A, Žel J.

Methods Mol Biol. 2018;1768:69-98. doi: 10.1007/978-1-4939-7778-9_5.

PMID:
29717438
2.

Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection.

Križnik M, Petek M, Dobnik D, Ramšak Ž, Baebler Š, Pollmann S, Kreuze JF, Žel J, Gruden K.

Front Plant Sci. 2017 Dec 22;8:2192. doi: 10.3389/fpls.2017.02192. eCollection 2017.

3.

ALF: a strategy for identification of unauthorized GMOs in complex mixtures by a GW-NGS method and dedicated bioinformatics analysis.

Košir AB, Arulandhu AJ, Voorhuijzen MM, Xiao H, Hagelaar R, Staats M, Costessi A, Žel J, Kok EJ, Dijk JPV.

Sci Rep. 2017 Oct 26;7(1):14155. doi: 10.1038/s41598-017-14469-8.

4.

Inter-laboratory analysis of selected genetically modified plant reference materials with digital PCR.

Dobnik D, Demšar T, Huber I, Gerdes L, Broeders S, Roosens N, Debode F, Berben G, Žel J.

Anal Bioanal Chem. 2018 Jan;410(1):211-221. doi: 10.1007/s00216-017-0711-1. Epub 2017 Oct 25.

5.

Droplet volume variability as a critical factor for accuracy of absolute quantification using droplet digital PCR.

Košir AB, Divieto C, Pavšič J, Pavarelli S, Dobnik D, Dreo T, Bellotti R, Sassi MP, Žel J.

Anal Bioanal Chem. 2017 Nov;409(28):6689-6697. doi: 10.1007/s00216-017-0625-y. Epub 2017 Sep 18.

6.

Development and inter-laboratory assessment of droplet digital PCR assays for multiplex quantification of 15 genetically modified soybean lines.

Košir AB, Spilsberg B, Holst-Jensen A, Žel J, Dobnik D.

Sci Rep. 2017 Aug 17;7(1):8601. doi: 10.1038/s41598-017-09377-w.

7.

Inter-laboratory assessment of different digital PCR platforms for quantification of human cytomegalovirus DNA.

Pavšič J, Devonshire A, Blejec A, Foy CA, Van Heuverswyn F, Jones GM, Schimmel H, Žel J, Huggett JF, Redshaw N, Karczmarczyk M, Mozioğlu E, Akyürek S, Akgöz M, Milavec M.

Anal Bioanal Chem. 2017 Apr;409(10):2601-2614. doi: 10.1007/s00216-017-0206-0. Epub 2017 Jan 26.

8.

Multiplex quantification of four DNA targets in one reaction with Bio-Rad droplet digital PCR system for GMO detection.

Dobnik D, Štebih D, Blejec A, Morisset D, Žel J.

Sci Rep. 2016 Oct 14;6:35451. doi: 10.1038/srep35451.

9.

The use of digital PCR to improve the application of quantitative molecular diagnostic methods for tuberculosis.

Devonshire AS, O'Sullivan DM, Honeyborne I, Jones G, Karczmarczyk M, Pavšič J, Gutteridge A, Milavec M, Mendoza P, Schimmel H, Van Heuverswyn F, Gorton R, Cirillo DM, Borroni E, Harris K, Barnard M, Heydenrych A, Ndusilo N, Wallis CL, Pillay K, Barry T, Reddington K, Richter E, Mozioğlu E, Akyürek S, Yalçınkaya B, Akgoz M, Žel J, Foy CA, McHugh TD, Huggett JF.

BMC Infect Dis. 2016 Aug 3;16:366. doi: 10.1186/s12879-016-1696-7.

10.

An international comparability study on quantification of mRNA gene expression ratios: CCQM-P103.1.

Devonshire AS, Sanders R, Whale AS, Nixon GJ, Cowen S, Ellison SL, Parkes H, Pine PS, Salit M, McDaniel J, Munro S, Lund S, Matsukura S, Sekiguchi Y, Kawaharasaki M, Granjeiro JM, Falagan-Lotsch P, Saraiva AM, Couto P, Yang I, Kwon H, Park SR, Demšar T, Žel J, Blejec A, Milavec M, Dong L, Zhang L, Sui Z, Wang J, Viroonudomphol D, Prawettongsopon C, Partis L, Baoutina A, Emslie K, Takatsu A, Akyurek S, Akgoz M, Vonsky M, Konopelko LA, Cundapi EM, Urquiza MP, Huggett JF, Foy CA.

Biomol Detect Quantif. 2016 Jun 6;8:15-28. doi: 10.1016/j.bdq.2016.05.003. eCollection 2016 Jun.

11.

Solanum venturii, a suitable model system for virus-induced gene silencing studies in potato reveals StMKK6 as an important player in plant immunity.

Dobnik D, Lazar A, Stare T, Gruden K, Vleeshouwers VG, Žel J.

Plant Methods. 2016 May 20;12:29. doi: 10.1186/s13007-016-0129-3. eCollection 2016.

12.

Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products.

Holst-Jensen A, Spilsberg B, Arulandhu AJ, Kok E, Shi J, Zel J.

Anal Bioanal Chem. 2016 Jul;408(17):4595-614. doi: 10.1007/s00216-016-9549-1. Epub 2016 Apr 21. Review.

13.

DNA enrichment approaches to identify unauthorized genetically modified organisms (GMOs).

Arulandhu AJ, van Dijk JP, Dobnik D, Holst-Jensen A, Shi J, Zel J, Kok EJ.

Anal Bioanal Chem. 2016 Jul;408(17):4575-93. doi: 10.1007/s00216-016-9513-0. Epub 2016 Apr 16. Review.

PMID:
27086015
14.

[Dissertations 25 years after date 44. Behaviour at high temperatures of palladium based dental alloys].

van der Zel JM.

Ned Tijdschr Tandheelkd. 2016 Feb;123(2):93-7. doi: 10.5177/ntvt.2016.02.15167. Dutch.

PMID:
26878716
15.

Detection of Rare Drug Resistance Mutations by Digital PCR in a Human Influenza A Virus Model System and Clinical Samples.

Whale AS, Bushell CA, Grant PR, Cowen S, Gutierrez-Aguirre I, O'Sullivan DM, Žel J, Milavec M, Foy CA, Nastouli E, Garson JA, Huggett JF.

J Clin Microbiol. 2016 Feb;54(2):392-400. doi: 10.1128/JCM.02611-15. Epub 2015 Dec 9.

16.

Assessment of the real-time PCR and different digital PCR platforms for DNA quantification.

Pavšič J, Žel J, Milavec M.

Anal Bioanal Chem. 2016 Jan;408(1):107-21. doi: 10.1007/s00216-015-9107-2. Epub 2015 Oct 31.

17.

Digital PCR for direct quantification of viruses without DNA extraction.

Pavšič J, Žel J, Milavec M.

Anal Bioanal Chem. 2016 Jan;408(1):67-75. doi: 10.1007/s00216-015-9109-0. Epub 2015 Oct 19.

18.

Multiplex quantification of 12 European Union authorized genetically modified maize lines with droplet digital polymerase chain reaction.

Dobnik D, Spilsberg B, Bogožalec Košir A, Holst-Jensen A, Žel J.

Anal Chem. 2015 Aug 18;87(16):8218-26. doi: 10.1021/acs.analchem.5b01208. Epub 2015 Jul 29.

19.

Clitocypin, a fungal cysteine protease inhibitor, exerts its insecticidal effect on Colorado potato beetle larvae by inhibiting their digestive cysteine proteases.

Šmid I, Rotter A, Gruden K, Brzin J, Buh Gašparič M, Kos J, Žel J, Sabotič J.

Pestic Biochem Physiol. 2015 Jul;122:59-66. doi: 10.1016/j.pestbp.2014.12.022. Epub 2014 Dec 23.

PMID:
26071808
20.

Standardization of Nucleic Acid Tests for Clinical Measurements of Bacteria and Viruses.

Pavšič J, Devonshire AS, Parkes H, Schimmel H, Foy CA, Karczmarczyk M, Gutiérrez-Aguirre I, Honeyborne I, Huggett JF, McHugh TD, Milavec M, Zeichhardt H, Žel J.

J Clin Microbiol. 2015 Jul;53(7):2008-14. doi: 10.1128/JCM.02136-14. Epub 2014 Nov 12. Review.

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