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Items: 1 to 20 of 87

1.

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies.

Tulpová Z, Luo MC, Toegelová H, Visendi P, Hayashi S, Vojta P, Paux E, Kilian A, Abrouk M, Bartoš J, Hajdúch M, Batley J, Edwards D, Doležel J, Šimková H.

N Biotechnol. 2018 Mar 8. pii: S1871-6784(17)30510-1. doi: 10.1016/j.nbt.2018.03.003. [Epub ahead of print]

PMID:
29526810
2.

Features of the organization of bread wheat chromosome 5BS based on physical mapping.

Salina EA, Nesterov MA, Frenkel Z, Kiseleva AA, Timonova EM, Magni F, Vrána J, Šafář J, Šimková H, Doležel J, Korol A, Sergeeva EM.

BMC Genomics. 2018 Feb 9;19(Suppl 3):80. doi: 10.1186/s12864-018-4470-y.

3.

Physical Map of the Short Arm of Bread Wheat Chromosome 3D.

Holušová K, Vrána J, Šafář J, Šimková H, Balcárková B, Frenkel Z, Darrier B, Paux E, Cattonaro F, Berges H, Letellier T, Alaux M, Doležel J, Bartoš J.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2017.03.0021.

4.

Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly.

Thind AK, Wicker T, Šimková H, Fossati D, Moullet O, Brabant C, Vrána J, Doležel J, Krattinger SG.

Nat Biotechnol. 2017 Aug;35(8):793-796. doi: 10.1038/nbt.3877. Epub 2017 May 15.

5.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

6.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

PMID:
28447635
7.

Flow Analysis and Sorting of Plant Chromosomes.

Vrána J, Cápal P, Šimková H, Karafiátová M, Čížková J, Doležel J.

Curr Protoc Cytom. 2016 Oct 10;78:5.3.1-5.3.43. doi: 10.1002/cpcy.9.

PMID:
27723090
8.

Construction of BAC Libraries from Flow-Sorted Chromosomes.

Šafář J, Šimková H, Doležel J.

Methods Mol Biol. 2016;1429:135-49. doi: 10.1007/978-1-4939-3622-9_11.

PMID:
27511172
9.

The in silico identification and characterization of a bread wheat/Triticum militinae introgression line.

Abrouk M, Balcárková B, Šimková H, Komínkova E, Martis MM, Jakobson I, Timofejeva L, Rey E, Vrána J, Kilian A, Järve K, Doležel J, Valárik M.

Plant Biotechnol J. 2017 Feb;15(2):249-256. doi: 10.1111/pbi.12610. Epub 2016 Sep 16.

10.

The Enigma of Progressively Partial Endoreplication: New Insights Provided by Flow Cytometry and Next-Generation Sequencing.

Hřibová E, Holušová K, Trávníček P, Petrovská B, Ponert J, Šimková H, Kubátová B, Jersáková J, Čurn V, Suda J, Doležel J, Vrána J.

Genome Biol Evol. 2016 Jul 2;8(6):1996-2005. doi: 10.1093/gbe/evw141.

11.

Chromosome identification for the carnivorous plant Genlisea margaretae.

Tran TD, Šimková H, Schmidt R, Doležel J, Schubert I, Fuchs J.

Chromosoma. 2017 Jun;126(3):389-397. doi: 10.1007/s00412-016-0599-0. Epub 2016 May 7.

PMID:
27153834
12.

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

Staňková H, Hastie AR, Chan S, Vrána J, Tulpová Z, Kubaláková M, Visendi P, Hayashi S, Luo M, Batley J, Edwards D, Doležel J, Šimková H.

Plant Biotechnol J. 2016 Jul;14(7):1523-31. doi: 10.1111/pbi.12513. Epub 2016 Jan 23.

13.

An efficient approach to BAC based assembly of complex genomes.

Visendi P, Berkman PJ, Hayashi S, Golicz AA, Bayer PE, Ruperao P, Hurgobin B, Montenegro J, Chan CK, Staňková H, Batley J, Šimková H, Doležel J, Edwards D.

Plant Methods. 2016 Jan 20;12:2. doi: 10.1186/s13007-016-0107-9. eCollection 2016.

14.

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

Marques A, Ribeiro T, Neumann P, Macas J, Novák P, Schubert V, Pellino M, Fuchs J, Ma W, Kuhlmann M, Brandt R, Vanzela AL, Beseda T, Šimková H, Pedrosa-Harand A, Houben A.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13633-8. doi: 10.1073/pnas.1512255112. Epub 2015 Oct 21. Erratum in: Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):E6720.

15.

Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes.

Kumar A, Seetan R, Mergoum M, Tiwari VK, Iqbal MJ, Wang Y, Al-Azzam O, Šimková H, Luo MC, Dvorak J, Gu YQ, Denton A, Kilian A, Lazo GR, Kianian SF.

BMC Genomics. 2015 Oct 16;16:800. doi: 10.1186/s12864-015-2030-2.

16.

A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.

Kobayashi F, Wu J, Kanamori H, Tanaka T, Katagiri S, Karasawa W, Kaneko S, Watanabe S, Sakaguchi T, Hanawa Y, Fujisawa H, Kurita K, Abe C, Iehisa JC, Ohno R, Šafář J, Šimková H, Mukai Y, Hamada M, Saito M, Ishikawa G, Katayose Y, Endo TR, Takumi S, Nakamura T, Sato K, Ogihara Y, Hayakawa K, Doležel J, Nasuda S, Matsumoto T, Handa H.

BMC Genomics. 2015 Aug 12;16:595. doi: 10.1186/s12864-015-1803-y.

17.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

18.

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.

Akpinar BA, Magni F, Yuce M, Lucas SJ, Šimková H, Šafář J, Vautrin S, Bergès H, Cattonaro F, Doležel J, Budak H.

BMC Genomics. 2015 Jun 13;16:453. doi: 10.1186/s12864-015-1641-y.

19.

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene.

Staňková H, Valárik M, Lapitan NL, Berkman PJ, Batley J, Edwards D, Luo MC, Tulpová Z, Kubaláková M, Stein N, Doležel J, Šimková H.

Theor Appl Genet. 2015 Jul;128(7):1373-83. doi: 10.1007/s00122-015-2512-2. Epub 2015 Apr 11.

PMID:
25862680
20.

New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.

Helguera M, Rivarola M, Clavijo B, Martis MM, Vanzetti LS, González S, Garbus I, Leroy P, Šimková H, Valárik M, Caccamo M, Doležel J, Mayer KFX, Feuillet C, Tranquilli G, Paniego N, Echenique V.

Plant Sci. 2015 Apr;233:200-212. doi: 10.1016/j.plantsci.2014.12.004. Epub 2014 Dec 18.

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