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Items: 1 to 20 of 30

1.

Heavy-atom labeling of RNA by PLOR for de novo crystallographic phasing.

Stagno JR, Yu P, Dyba MA, Wang YX, Liu Y.

PLoS One. 2019 Apr 15;14(4):e0215555. doi: 10.1371/journal.pone.0215555. eCollection 2019.

2.

Molecular architecture of a cylindrical self-assembly at human centrosomes.

Kim TS, Zhang L, Il Ahn J, Meng L, Chen Y, Lee E, Bang JK, Lim JM, Ghirlando R, Fan L, Wang YX, Kim BY, Park JE, Lee KS.

Nat Commun. 2019 Mar 11;10(1):1151. doi: 10.1038/s41467-019-08838-2.

3.

Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA.

Liu Y, Holmstrom E, Yu P, Tan K, Zuo X, Nesbitt DJ, Sousa R, Stagno JR, Wang YX.

Nat Protoc. 2018 May;13(5):987-1005. doi: 10.1038/nprot.2018.002. Epub 2018 Apr 12.

PMID:
29651055
4.

Conformational dynamics of the TTD-PHD histone reader module of the UHRF1 epigenetic regulator reveals multiple histone-binding states, allosteric regulation, and druggability.

Houliston RS, Lemak A, Iqbal A, Ivanochko D, Duan S, Kaustov L, Ong MS, Fan L, Senisterra G, Brown PJ, Wang YX, Arrowsmith CH.

J Biol Chem. 2017 Dec 22;292(51):20947-20959. doi: 10.1074/jbc.M117.799700. Epub 2017 Oct 26.

5.

Topological Structure Determination of RNA Using Small-Angle X-Ray Scattering.

Bhandari YR, Fan L, Fang X, Zaki GF, Stahlberg EA, Jiang W, Schwieters CD, Stagno JR, Wang YX.

J Mol Biol. 2017 Nov 24;429(23):3635-3649. doi: 10.1016/j.jmb.2017.09.006. Epub 2017 Sep 14.

6.

Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states.

Cantero-Camacho Á, Fan L, Wang YX, Gallego J.

RNA. 2017 Sep;23(9):1465-1476. doi: 10.1261/rna.060632.117. Epub 2017 Jun 19.

7.

Modeling RNA topological structures using small angle X-ray scattering.

Bhandari YR, Jiang W, Stahlberg EA, Stagno JR, Wang YX.

Methods. 2016 Jul 1;103:18-24. doi: 10.1016/j.ymeth.2016.04.015. Epub 2016 Jun 2. Review.

PMID:
27090001
8.

Applications of PLOR in labeling large RNAs at specific sites.

Liu Y, Yu P, Dyba M, Sousa R, Stagno JR, Wang YX.

Methods. 2016 Jul 1;103:4-10. doi: 10.1016/j.ymeth.2016.03.014. Epub 2016 Mar 23.

PMID:
27033177
9.

RNA conformation: Lightening up invisible states.

Wang YX.

Nat Chem Biol. 2016 Mar;12(3):126-7. doi: 10.1038/nchembio.2030. No abstract available.

PMID:
26881762
10.

Specific labeling: An effective tool to explore the RNA world.

Liu Y, Sousa R, Wang YX.

Bioessays. 2016 Feb;38(2):192-200. doi: 10.1002/bies.201500119. Epub 2015 Dec 14. Review.

PMID:
26660847
11.

New Insights into the RNA-Binding and E3 Ubiquitin Ligase Activities of Roquins.

Zhang Q, Fan L, Hou F, Dong A, Wang YX, Tong Y.

Sci Rep. 2015 Oct 22;5:15660. doi: 10.1038/srep15660.

12.

Allosteric Activation of Bacterial Swi2/Snf2 (Switch/Sucrose Non-fermentable) Protein RapA by RNA Polymerase: BIOCHEMICAL AND STRUCTURAL STUDIES.

Kakar S, Fang X, Lubkowska L, Zhou YN, Shaw GX, Wang YX, Jin DJ, Kashlev M, Ji X.

J Biol Chem. 2015 Sep 25;290(39):23656-69. doi: 10.1074/jbc.M114.618801. Epub 2015 Aug 13.

13.

Hydrodynamic and Membrane Binding Properties of Purified Rous Sarcoma Virus Gag Protein.

Dick RA, Datta SA, Nanda H, Fang X, Wen Y, Barros M, Wang YX, Rein A, Vogt VM.

J Virol. 2015 Oct;89(20):10371-82. doi: 10.1128/JVI.01628-15. Epub 2015 Aug 5.

14.

Synthesis and applications of RNAs with position-selective labelling and mosaic composition.

Liu Y, Holmstrom E, Zhang J, Yu P, Wang J, Dyba MA, Chen D, Ying J, Lockett S, Nesbitt DJ, Ferré-D'Amaré AR, Sousa R, Stagno JR, Wang YX.

Nature. 2015 Jun 18;522(7556):368-72. doi: 10.1038/nature14352. Epub 2015 May 4.

15.

Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures.

Fang X, Stagno JR, Bhandari YR, Zuo X, Wang YX.

Curr Opin Struct Biol. 2015 Feb;30:147-160. doi: 10.1016/j.sbi.2015.02.010. Epub 2015 Mar 10. Review.

PMID:
25765781
16.

A mechanism of global shape-dependent recognition and phosphorylation of filamin by protein kinase A.

Ithychanda SS, Fang X, Mohan ML, Zhu L, Tirupula KC, Naga Prasad SV, Wang YX, Karnik SS, Qin J.

J Biol Chem. 2015 Mar 27;290(13):8527-38. doi: 10.1074/jbc.M114.633446. Epub 2015 Feb 9.

17.

Structural characterization of a flexible two-domain protein in solution using small angle X-ray scattering and NMR data.

Lemak A, Wu B, Yee A, Houliston S, Lee HW, Gutmanas A, Fang X, Garcia M, Semesi A, Wang YX, Prestegard JH, Arrowsmith CH.

Structure. 2014 Dec 2;22(12):1862-1874. doi: 10.1016/j.str.2014.09.013. Epub 2014 Nov 6.

18.

Cu(I)-mediated allosteric switching in a copper-sensing operon repressor (CsoR).

Chang FM, Coyne HJ, Cubillas C, Vinuesa P, Fang X, Ma Z, Ma D, Helmann JD, García-de los Santos A, Wang YX, Dann CE 3rd, Giedroc DP.

J Biol Chem. 2014 Jul 4;289(27):19204-17. doi: 10.1074/jbc.M114.556704. Epub 2014 May 15.

19.

An unusual topological structure of the HIV-1 Rev response element.

Fang X, Wang J, O'Carroll IP, Mitchell M, Zuo X, Wang Y, Yu P, Liu Y, Rausch JW, Dyba MA, Kjems J, Schwieters CD, Seifert S, Winans RE, Watts NR, Stahl SJ, Wingfield PT, Byrd RA, Le Grice SF, Rein A, Wang YX.

Cell. 2013 Oct 24;155(3):594-605. doi: 10.1016/j.cell.2013.10.008. Epub 2013 Oct 24.

20.

Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities.

Ying J, Wang J, Grishaev A, Yu P, Wang YX, Bax A.

J Biomol NMR. 2011 Sep;51(1-2):89-103. doi: 10.1007/s10858-011-9544-y. Epub 2011 Sep 27.

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